Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CDH11P55287 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH11P55287 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH11P55287 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CDH11P55287 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
CDH11P55287 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CDH11P55287 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.45
CDH11P55287 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CDH11P55287 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.83■□□□□ 0.44
CDH11P55287 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 MYC-209ENST00000641252 345 ntBASIC17.83■□□□□ 0.44
CDH11P55287 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.83■□□□□ 0.44
CDH11P55287 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 AC093503.3-201ENST00000624917 2352 ntBASIC17.83■□□□□ 0.44
CDH11P55287 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.83■□□□□ 0.44
CDH11P55287 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.83■□□□□ 0.44
CDH11P55287 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CDH11P55287 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CDH11P55287 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 AL032819.2-201ENST00000624543 2162 ntBASIC17.82■□□□□ 0.44
CDH11P55287 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.82■□□□□ 0.44
CDH11P55287 AL355472.2-201ENST00000422958 438 ntBASIC17.82■□□□□ 0.44
CDH11P55287 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CDH11P55287 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.82■□□□□ 0.44
CDH11P55287 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.82■□□□□ 0.44
CDH11P55287 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CDH11P55287 CYP21A1P-202ENST00000354927 1481 ntBASIC17.82■□□□□ 0.44
CDH11P55287 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CDH11P55287 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH11P55287 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH11P55287 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.81■□□□□ 0.44
CDH11P55287 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH11P55287 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH11P55287 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH11P55287 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.81■□□□□ 0.44
CDH11P55287 AC100791.3-201ENST00000617619 330 ntBASIC17.81■□□□□ 0.44
CDH11P55287 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.81■□□□□ 0.44
CDH11P55287 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH11P55287 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.81■□□□□ 0.44
CDH11P55287 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CDH11P55287 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CDH11P55287 KRT16P6-202ENST00000425692 1426 ntBASIC17.81■□□□□ 0.44
CDH11P55287 KRT8P17-201ENST00000453110 1448 ntBASIC17.81■□□□□ 0.44
CDH11P55287 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH11P55287 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH11P55287 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH11P55287 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH11P55287 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
CDH11P55287 PTBP1P-201ENST00000554374 1601 ntBASIC17.8■□□□□ 0.44
CDH11P55287 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH11P55287 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.8■□□□□ 0.44
CDH11P55287 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CDH11P55287 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CDH11P55287 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CDH11P55287 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CDH11P55287 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH11P55287 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.8■□□□□ 0.44
CDH11P55287 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms