Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
PTPN4P29074 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.53■□□□□ 0.72
PTPN4P29074 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PTPN4P29074 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.52■□□□□ 0.72
PTPN4P29074 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PTPN4P29074 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PTPN4P29074 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.52■□□□□ 0.72
PTPN4P29074 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.52■□□□□ 0.72
PTPN4P29074 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
PTPN4P29074 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.52■□□□□ 0.72
PTPN4P29074 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.52■□□□□ 0.72
PTPN4P29074 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.52■□□□□ 0.72
PTPN4P29074 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
PTPN4P29074 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
PTPN4P29074 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PTPN4P29074 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN4P29074 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN4P29074 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN4P29074 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
PTPN4P29074 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
PTPN4P29074 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
PTPN4P29074 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PTPN4P29074 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PTPN4P29074 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 AL355472.2-201ENST00000422958 438 ntBASIC19.51■□□□□ 0.71
PTPN4P29074 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 AC093827.2-201ENST00000512654 315 ntBASIC19.51■□□□□ 0.71
PTPN4P29074 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.51■□□□□ 0.71
PTPN4P29074 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.51■□□□□ 0.71
PTPN4P29074 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.51■□□□□ 0.71
PTPN4P29074 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PTPN4P29074 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN4P29074 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.51■□□□□ 0.71
PTPN4P29074 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN4P29074 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PTPN4P29074 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PTPN4P29074 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.5■□□□□ 0.71
PTPN4P29074 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.5■□□□□ 0.71
PTPN4P29074 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.5■□□□□ 0.71
PTPN4P29074 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PTPN4P29074 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
PTPN4P29074 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.5■□□□□ 0.71
PTPN4P29074 CYP2T3P-201ENST00000601990 817 ntBASIC19.5■□□□□ 0.71
PTPN4P29074 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.5■□□□□ 0.71
PTPN4P29074 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.5■□□□□ 0.71
PTPN4P29074 KRT17P1-201ENST00000399211 1546 ntBASIC19.5■□□□□ 0.71
PTPN4P29074 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTPN4P29074 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.5■□□□□ 0.71
PTPN4P29074 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
PTPN4P29074 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms