Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RNF165-205ENST00000588679 2904 ntBASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC26.29■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 TREX1-205ENST00000625293 1783 ntBASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CD177P1-201ENST00000606252 935 ntBASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC26.27■■□□□ 1.8
SENP3-EIF4A1A0A087X0R7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC097493.4-201ENST00000641197 219 ntBASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC26.26■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC26.24■■□□□ 1.79
SENP3-EIF4A1A0A087X0R7 RPPH1-201ENST00000516869 333 ntBASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms