Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.73■■□□□ 1.87
SLC44A3Q8N4M1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SLC44A3Q8N4M1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SLC44A3Q8N4M1 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
SLC44A3Q8N4M1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.73■■□□□ 1.87
SLC44A3Q8N4M1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.72■■□□□ 1.87
SLC44A3Q8N4M1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SLC44A3Q8N4M1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
SLC44A3Q8N4M1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SLC44A3Q8N4M1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.87
SLC44A3Q8N4M1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SLC44A3Q8N4M1 U85056.1-201ENST00000616429 682 ntBASIC26.7■■□□□ 1.86
SLC44A3Q8N4M1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.7■■□□□ 1.86
SLC44A3Q8N4M1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SLC44A3Q8N4M1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SLC44A3Q8N4M1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
SLC44A3Q8N4M1 AC018358.1-201ENST00000631079 1402 ntBASIC26.68■■□□□ 1.86
SLC44A3Q8N4M1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
SLC44A3Q8N4M1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.67■■□□□ 1.86
SLC44A3Q8N4M1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
SLC44A3Q8N4M1 AC135983.2-203ENST00000454486 1613 ntBASIC26.66■■□□□ 1.86
SLC44A3Q8N4M1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
SLC44A3Q8N4M1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.65■■□□□ 1.86
SLC44A3Q8N4M1 WHAMMP2-203ENST00000563942 1603 ntBASIC26.65■■□□□ 1.86
SLC44A3Q8N4M1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SLC44A3Q8N4M1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SLC44A3Q8N4M1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.64■■□□□ 1.86
SLC44A3Q8N4M1 AC060814.1-201ENST00000554326 538 ntBASIC26.64■■□□□ 1.86
SLC44A3Q8N4M1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
SLC44A3Q8N4M1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
SLC44A3Q8N4M1 AC127502.1-201ENST00000399971 1502 ntBASIC26.64■■□□□ 1.85
SLC44A3Q8N4M1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SLC44A3Q8N4M1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
SLC44A3Q8N4M1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.62■■□□□ 1.85
SLC44A3Q8N4M1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.6■■□□□ 1.85
SLC44A3Q8N4M1 AC148477.6-201ENST00000623746 465 ntBASIC26.6■■□□□ 1.85
SLC44A3Q8N4M1 AC110285.7-201ENST00000624417 1536 ntBASIC26.59■■□□□ 1.85
SLC44A3Q8N4M1 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SLC44A3Q8N4M1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
SLC44A3Q8N4M1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.58■■□□□ 1.85
SLC44A3Q8N4M1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.58■■□□□ 1.85
SLC44A3Q8N4M1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SLC44A3Q8N4M1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.58■■□□□ 1.84
SLC44A3Q8N4M1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.57■■□□□ 1.84
SLC44A3Q8N4M1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SLC44A3Q8N4M1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
SLC44A3Q8N4M1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
SLC44A3Q8N4M1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SLC44A3Q8N4M1 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC26.57■■□□□ 1.84
SLC44A3Q8N4M1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
SLC44A3Q8N4M1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SLC44A3Q8N4M1 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SLC44A3Q8N4M1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.55■■□□□ 1.84
SLC44A3Q8N4M1 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.54■■□□□ 1.84
SLC44A3Q8N4M1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SLC44A3Q8N4M1 TSPY13P-201ENST00000338964 914 ntBASIC26.53■■□□□ 1.84
SLC44A3Q8N4M1 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.53■■□□□ 1.84
SLC44A3Q8N4M1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.53■■□□□ 1.84
SLC44A3Q8N4M1 KRT18P60-201ENST00000312876 1297 ntBASIC26.52■■□□□ 1.84
SLC44A3Q8N4M1 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SLC44A3Q8N4M1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.51■■□□□ 1.83
SLC44A3Q8N4M1 AC004987.1-201ENST00000428627 508 ntBASIC26.51■■□□□ 1.83
SLC44A3Q8N4M1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.51■■□□□ 1.83
SLC44A3Q8N4M1 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
SLC44A3Q8N4M1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SLC44A3Q8N4M1 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SLC44A3Q8N4M1 AC092296.2-201ENST00000589470 999 ntBASIC26.5■■□□□ 1.83
SLC44A3Q8N4M1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.5■■□□□ 1.83
SLC44A3Q8N4M1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 MIR219A2-201ENST00000608502 1504 ntBASIC26.49■■□□□ 1.83
SLC44A3Q8N4M1 ATP5G2P3-201ENST00000429083 425 ntBASIC26.48■■□□□ 1.83
SLC44A3Q8N4M1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.48■■□□□ 1.83
SLC44A3Q8N4M1 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.48■■□□□ 1.83
SLC44A3Q8N4M1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SLC44A3Q8N4M1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SLC44A3Q8N4M1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
SLC44A3Q8N4M1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.46■■□□□ 1.83
SLC44A3Q8N4M1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
SLC44A3Q8N4M1 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SLC44A3Q8N4M1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SLC44A3Q8N4M1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
SLC44A3Q8N4M1 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SLC44A3Q8N4M1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SLC44A3Q8N4M1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.44■■□□□ 1.82
SLC44A3Q8N4M1 ECEL1P2-201ENST00000461596 1295 ntBASIC26.44■■□□□ 1.82
SLC44A3Q8N4M1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.44■■□□□ 1.82
SLC44A3Q8N4M1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms