Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ABHD17AP4-201ENST00000411545 909 ntBASIC30.98■■■□□ 2.55
VPS53Q5VIR6 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
VPS53Q5VIR6 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.97■■■□□ 2.55
VPS53Q5VIR6 LINC00273-201ENST00000539813 1452 ntBASIC30.96■■■□□ 2.55
VPS53Q5VIR6 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.96■■■□□ 2.55
VPS53Q5VIR6 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
VPS53Q5VIR6 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.95■■■□□ 2.55
VPS53Q5VIR6 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.95■■■□□ 2.55
VPS53Q5VIR6 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.94■■■□□ 2.54
VPS53Q5VIR6 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
VPS53Q5VIR6 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
VPS53Q5VIR6 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.93■■■□□ 2.54
VPS53Q5VIR6 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
VPS53Q5VIR6 AC135983.2-203ENST00000454486 1613 ntBASIC30.92■■■□□ 2.54
VPS53Q5VIR6 WHAMMP2-203ENST00000563942 1603 ntBASIC30.92■■■□□ 2.54
VPS53Q5VIR6 ZNRF2P2-203ENST00000454624 420 ntBASIC30.92■■■□□ 2.54
VPS53Q5VIR6 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.92■■■□□ 2.54
VPS53Q5VIR6 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
VPS53Q5VIR6 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.92■■■□□ 2.54
VPS53Q5VIR6 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
VPS53Q5VIR6 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
VPS53Q5VIR6 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
VPS53Q5VIR6 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
VPS53Q5VIR6 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
VPS53Q5VIR6 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
VPS53Q5VIR6 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.89■■■□□ 2.54
VPS53Q5VIR6 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.88■■■□□ 2.53
VPS53Q5VIR6 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.87■■■□□ 2.53
VPS53Q5VIR6 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
VPS53Q5VIR6 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
VPS53Q5VIR6 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
VPS53Q5VIR6 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.85■■■□□ 2.53
VPS53Q5VIR6 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
VPS53Q5VIR6 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
VPS53Q5VIR6 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
VPS53Q5VIR6 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
VPS53Q5VIR6 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
VPS53Q5VIR6 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
VPS53Q5VIR6 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.83■■■□□ 2.53
VPS53Q5VIR6 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.82■■■□□ 2.52
VPS53Q5VIR6 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
VPS53Q5VIR6 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.82■■■□□ 2.52
VPS53Q5VIR6 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
VPS53Q5VIR6 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.81■■■□□ 2.52
VPS53Q5VIR6 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
VPS53Q5VIR6 AP004833.2-201ENST00000532228 1454 ntBASIC30.81■■■□□ 2.52
VPS53Q5VIR6 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
VPS53Q5VIR6 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.8■■■□□ 2.52
VPS53Q5VIR6 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.79■■■□□ 2.52
VPS53Q5VIR6 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.79■■■□□ 2.52
VPS53Q5VIR6 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
VPS53Q5VIR6 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
VPS53Q5VIR6 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
VPS53Q5VIR6 AC100797.4-201ENST00000631653 1827 ntBASIC30.78■■■□□ 2.52
VPS53Q5VIR6 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.78■■■□□ 2.52
VPS53Q5VIR6 AC142086.6-201ENST00000621154 1765 ntBASIC30.77■■■□□ 2.52
VPS53Q5VIR6 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
VPS53Q5VIR6 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
VPS53Q5VIR6 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.77■■■□□ 2.52
VPS53Q5VIR6 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
VPS53Q5VIR6 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
VPS53Q5VIR6 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
VPS53Q5VIR6 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
VPS53Q5VIR6 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
VPS53Q5VIR6 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.74■■■□□ 2.51
VPS53Q5VIR6 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.74■■■□□ 2.51
VPS53Q5VIR6 LINC01971-201ENST00000617888 1048 ntBASIC30.74■■■□□ 2.51
VPS53Q5VIR6 DRD5P2-201ENST00000421395 2012 ntBASIC30.74■■■□□ 2.51
VPS53Q5VIR6 MIR7108-201ENST00000614319 87 ntBASIC30.73■■■□□ 2.51
VPS53Q5VIR6 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
VPS53Q5VIR6 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.71■■■□□ 2.51
VPS53Q5VIR6 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.71■■■□□ 2.51
VPS53Q5VIR6 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
VPS53Q5VIR6 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
VPS53Q5VIR6 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
VPS53Q5VIR6 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.5
VPS53Q5VIR6 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.5
VPS53Q5VIR6 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.69■■■□□ 2.5
VPS53Q5VIR6 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.69■■■□□ 2.5
VPS53Q5VIR6 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.69■■■□□ 2.5
VPS53Q5VIR6 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
VPS53Q5VIR6 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.69■■■□□ 2.5
VPS53Q5VIR6 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
VPS53Q5VIR6 DUX4L11-201ENST00000611504 1267 ntBASIC30.68■■■□□ 2.5
VPS53Q5VIR6 DUX4L12-201ENST00000614593 1267 ntBASIC30.68■■■□□ 2.5
VPS53Q5VIR6 DUX4L14-201ENST00000621227 1267 ntBASIC30.68■■■□□ 2.5
VPS53Q5VIR6 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms