Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CLRN1P58418 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CLRN1P58418 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CLRN1P58418 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.82■■□□□ 1.24
CLRN1P58418 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CLRN1P58418 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CLRN1P58418 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CLRN1P58418 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CLRN1P58418 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CLRN1P58418 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CLRN1P58418 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
CLRN1P58418 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
CLRN1P58418 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CLRN1P58418 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC22.8■■□□□ 1.24
CLRN1P58418 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
CLRN1P58418 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CLRN1P58418 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
CLRN1P58418 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.79■■□□□ 1.24
CLRN1P58418 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC22.79■■□□□ 1.24
CLRN1P58418 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CLRN1P58418 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
CLRN1P58418 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC22.78■■□□□ 1.24
CLRN1P58418 RPS2P35-201ENST00000443417 897 ntBASIC22.78■■□□□ 1.24
CLRN1P58418 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CLRN1P58418 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC22.77■■□□□ 1.24
CLRN1P58418 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC22.77■■□□□ 1.24
CLRN1P58418 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
CLRN1P58418 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CLRN1P58418 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CLRN1P58418 LINC00273-201ENST00000539813 1452 ntBASIC22.77■■□□□ 1.24
CLRN1P58418 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
CLRN1P58418 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CLRN1P58418 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CLRN1P58418 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
CLRN1P58418 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC22.77■■□□□ 1.23
CLRN1P58418 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC22.76■■□□□ 1.23
CLRN1P58418 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CLRN1P58418 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CLRN1P58418 AC135983.2-203ENST00000454486 1613 ntBASIC22.76■■□□□ 1.23
CLRN1P58418 AC100797.4-201ENST00000631653 1827 ntBASIC22.76■■□□□ 1.23
CLRN1P58418 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
CLRN1P58418 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.73■■□□□ 1.23
CLRN1P58418 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.73■■□□□ 1.23
CLRN1P58418 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CLRN1P58418 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
CLRN1P58418 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
CLRN1P58418 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.73■■□□□ 1.23
CLRN1P58418 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CLRN1P58418 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.73■■□□□ 1.23
CLRN1P58418 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.72■■□□□ 1.23
CLRN1P58418 WHAMMP2-203ENST00000563942 1603 ntBASIC22.72■■□□□ 1.23
CLRN1P58418 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CLRN1P58418 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.72■■□□□ 1.23
CLRN1P58418 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC22.72■■□□□ 1.23
CLRN1P58418 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CLRN1P58418 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CLRN1P58418 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.71■■□□□ 1.23
CLRN1P58418 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CLRN1P58418 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CLRN1P58418 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CLRN1P58418 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
CLRN1P58418 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
CLRN1P58418 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CLRN1P58418 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CLRN1P58418 DUX4L29-201ENST00000425409 679 ntBASIC22.7■■□□□ 1.22
CLRN1P58418 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.7■■□□□ 1.22
CLRN1P58418 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CLRN1P58418 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.7■■□□□ 1.22
CLRN1P58418 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CLRN1P58418 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.69■■□□□ 1.22
CLRN1P58418 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC22.69■■□□□ 1.22
CLRN1P58418 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.69■■□□□ 1.22
CLRN1P58418 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CLRN1P58418 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.68■■□□□ 1.22
CLRN1P58418 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.68■■□□□ 1.22
CLRN1P58418 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.68■■□□□ 1.22
CLRN1P58418 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CLRN1P58418 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
CLRN1P58418 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
CLRN1P58418 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.68■■□□□ 1.22
CLRN1P58418 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CLRN1P58418 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
CLRN1P58418 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.67■■□□□ 1.22
CLRN1P58418 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC22.67■■□□□ 1.22
CLRN1P58418 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CLRN1P58418 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC22.67■■□□□ 1.22
CLRN1P58418 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CLRN1P58418 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.67■■□□□ 1.22
CLRN1P58418 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CLRN1P58418 AC021231.2-201ENST00000594613 730 ntBASIC22.66■■□□□ 1.22
CLRN1P58418 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
CLRN1P58418 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CLRN1P58418 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CLRN1P58418 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
CLRN1P58418 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CLRN1P58418 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CLRN1P58418 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CLRN1P58418 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CLRN1P58418 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CLRN1P58418 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms