Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.43■□□□□ 0.7
HLA-DMBP28068 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HLA-DMBP28068 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
HLA-DMBP28068 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.43■□□□□ 0.7
HLA-DMBP28068 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HLA-DMBP28068 AP004833.2-201ENST00000532228 1454 ntBASIC19.41■□□□□ 0.7
HLA-DMBP28068 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
HLA-DMBP28068 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-DMBP28068 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HLA-DMBP28068 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DMBP28068 AL121749.1-202ENST00000609313 2153 ntBASIC19.4■□□□□ 0.7
HLA-DMBP28068 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.4■□□□□ 0.7
HLA-DMBP28068 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DMBP28068 AL162393.1-201ENST00000437852 946 ntBASIC19.4■□□□□ 0.7
HLA-DMBP28068 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DMBP28068 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HLA-DMBP28068 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HLA-DMBP28068 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HLA-DMBP28068 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DMBP28068 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DMBP28068 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HLA-DMBP28068 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.39■□□□□ 0.69
HLA-DMBP28068 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DMBP28068 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DMBP28068 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DMBP28068 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC19.38■□□□□ 0.69
HLA-DMBP28068 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DMBP28068 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DMBP28068 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HLA-DMBP28068 AC100797.4-201ENST00000631653 1827 ntBASIC19.38■□□□□ 0.69
HLA-DMBP28068 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DMBP28068 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DMBP28068 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC19.37■□□□□ 0.69
HLA-DMBP28068 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DMBP28068 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HLA-DMBP28068 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HLA-DMBP28068 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HLA-DMBP28068 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC19.36■□□□□ 0.69
HLA-DMBP28068 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HLA-DMBP28068 NRG1-221ENST00000614767 762 ntTSL 5 BASIC19.36■□□□□ 0.69
HLA-DMBP28068 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
HLA-DMBP28068 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.36■□□□□ 0.69
HLA-DMBP28068 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HLA-DMBP28068 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
HLA-DMBP28068 CHML-205ENST00000638160 705 ntTSL 3 BASIC19.35■□□□□ 0.69
HLA-DMBP28068 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HLA-DMBP28068 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.35■□□□□ 0.69
HLA-DMBP28068 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HLA-DMBP28068 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.34■□□□□ 0.69
HLA-DMBP28068 MIR3665-201ENST00000578708 105 ntBASIC19.34■□□□□ 0.69
HLA-DMBP28068 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.34■□□□□ 0.69
HLA-DMBP28068 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DMBP28068 BX255925.1-201ENST00000566954 1854 ntBASIC19.34■□□□□ 0.69
HLA-DMBP28068 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DMBP28068 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HLA-DMBP28068 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.33■□□□□ 0.69
HLA-DMBP28068 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HLA-DMBP28068 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DMBP28068 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DMBP28068 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DMBP28068 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HLA-DMBP28068 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DMBP28068 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
HLA-DMBP28068 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DMBP28068 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
HLA-DMBP28068 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.32■□□□□ 0.68
HLA-DMBP28068 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DMBP28068 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DMBP28068 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.32■□□□□ 0.68
HLA-DMBP28068 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DMBP28068 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HLA-DMBP28068 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC19.31■□□□□ 0.68
HLA-DMBP28068 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HLA-DMBP28068 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HLA-DMBP28068 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DMBP28068 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DMBP28068 AC005559.1-201ENST00000589661 871 ntBASIC19.3■□□□□ 0.68
HLA-DMBP28068 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HLA-DMBP28068 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DMBP28068 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DMBP28068 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HLA-DMBP28068 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DMBP28068 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC19.29■□□□□ 0.68
HLA-DMBP28068 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HLA-DMBP28068 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HLA-DMBP28068 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.28■□□□□ 0.68
HLA-DMBP28068 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HLA-DMBP28068 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DMBP28068 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
HLA-DMBP28068 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HLA-DMBP28068 DUX4L28-201ENST00000623687 678 ntBASIC19.27■□□□□ 0.68
HLA-DMBP28068 LINC01003-201ENST00000564834 1764 ntBASIC19.26■□□□□ 0.67
HLA-DMBP28068 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DMBP28068 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms