Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.791e-35■■■■□ 21.8
UPF1Q92900 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC19.86■□□□□ 0.771e-35■■■■□ 21.8
UPF1Q92900 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC18.17■□□□□ 0.51e-35■■■■□ 21.8
UPF1Q92900 SLC50A1-204ENST00000368405 1003 ntTSL 217.17■□□□□ 0.341e-35■■■■□ 21.8
UPF1Q92900 SLC50A1-207ENST00000479579 475 ntTSL 310.73□□□□□ -0.691e-35■■■■□ 21.8
UPF1Q92900 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.698e-15■■■■□ 21.8
UPF1Q92900 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.558e-15■■■■□ 21.8
UPF1Q92900 AL157935.2-202ENST00000548587 464 ntTSL 421.15■□□□□ 0.985e-12■■■■□ 21.8
UPF1Q92900 FOXO3-203ENST00000540898 2553 ntTSL 1 (best) BASIC11.64□□□□□ -0.552e-9■■■■□ 21.8
UPF1Q92900 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.145e-7■■■■□ 21.8
UPF1Q92900 RAD51D-215ENST00000588372 2214 ntTSL 513.03□□□□□ -0.325e-7■■■■□ 21.8
UPF1Q92900 GGCX-206ENST00000465637 563 ntTSL 417.3■□□□□ 0.363e-11■■■■□ 21.8
UPF1Q92900 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.14e-6■■■■□ 21.8
UPF1Q92900 TBC1D20-203ENST00000461304 2024 ntTSL 1 (best)26.43■■□□□ 1.824e-7■■■■□ 21.8
UPF1Q92900 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.454e-7■■■■□ 21.8
UPF1Q92900 TBC1D20-204ENST00000494633 3820 ntTSL 213.56□□□□□ -0.241e-8■■■■□ 21.8
UPF1Q92900 TBC1D20-202ENST00000461188 5195 ntTSL 29.74□□□□□ -0.854e-7■■■■□ 21.8
UPF1Q92900 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.174e-7■■■■□ 21.8
UPF1Q92900 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.18■□□□□ 0.822e-7■■■■□ 21.8
UPF1Q92900 AGPAT3-210ENST00000457068 924 ntTSL 322.95■■□□□ 1.263e-6■■■■□ 21.8
UPF1Q92900 AGPAT3-206ENST00000422850 1003 ntTSL 522.95■■□□□ 1.263e-6■■■■□ 21.8
UPF1Q92900 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.382e-9■■■■□ 21.8
UPF1Q92900 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.042e-9■■■■□ 21.8
UPF1Q92900 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.191e-6■■■■□ 21.8
UPF1Q92900 KIF2C-202ENST00000372224 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.548e-13■■■■□ 21.8
UPF1Q92900 KIF2C-201ENST00000372217 2955 ntTSL 1 (best) BASIC9.38□□□□□ -0.918e-13■■■■□ 21.8
UPF1Q92900 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.134e-7■■■■□ 21.8
UPF1Q92900 ADCY9-207ENST00000576936 697 ntTSL 519.29■□□□□ 0.681e-6■■■■□ 21.8
UPF1Q92900 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.411e-6■■■■□ 21.8
UPF1Q92900 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.752e-6■■■■□ 21.8
UPF1Q92900 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 525.53■■□□□ 1.681e-13■■■■□ 21.8
UPF1Q92900 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.931e-13■■■■□ 21.8
UPF1Q92900 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.781e-13■■■■□ 21.8
UPF1Q92900 AHNAK-203ENST00000525875 793 ntTSL 314.46□□□□□ -0.091e-13■■■■□ 21.8
UPF1Q92900 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.16□□□□□ -1.581e-13■■■■□ 21.8
UPF1Q92900 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.371e-7■■■■□ 21.8
UPF1Q92900 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.66□□□□□ -1.341e-7■■■■□ 21.8
UPF1Q92900 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.188e-10■■■■□ 21.8
UPF1Q92900 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC26.96■■□□□ 1.912e-7■■■■□ 21.7
UPF1Q92900 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.752e-7■■■■□ 21.7
UPF1Q92900 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.62■■□□□ 1.691e-9■■■■□ 21.7
UPF1Q92900 SPNS1-211ENST00000568829 780 ntTSL 524.08■■□□□ 1.451e-9■■■■□ 21.7
UPF1Q92900 SPNS1-208ENST00000566059 1615 ntTSL 524.04■■□□□ 1.441e-9■■■■□ 21.7
UPF1Q92900 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC22.25■■□□□ 1.151e-9■■■■□ 21.7
UPF1Q92900 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.53■■□□□ 1.041e-9■■■■□ 21.7
UPF1Q92900 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.46■□□□□ 0.871e-9■■■■□ 21.7
UPF1Q92900 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.811e-9■■■■□ 21.7
UPF1Q92900 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.74■□□□□ 0.591e-9■■■■□ 21.7
UPF1Q92900 SMOC1-202ENST00000381280 3666 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.533e-6■■■■□ 21.7
UPF1Q92900 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC24.45■■□□□ 1.512e-8■■■■□ 21.7
UPF1Q92900 FBXO44-209ENST00000475435 942 ntTSL 319.74■□□□□ 0.752e-8■■■■□ 21.7
UPF1Q92900 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.94■□□□□ 0.622e-8■■■■□ 21.7
UPF1Q92900 FBXO44-208ENST00000471895 769 ntTSL 315.22■□□□□ 0.032e-8■■■■□ 21.7
UPF1Q92900 FBXO44-202ENST00000251547 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.272e-8■■■■□ 21.7
UPF1Q92900 FBXO44-206ENST00000376770 3320 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.762e-8■■■■□ 21.7
UPF1Q92900 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.442e-17■■■■□ 21.7
UPF1Q92900 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.5■■■□□ 2.639e-8■■■■□ 21.7
UPF1Q92900 MBOAT7-207ENST00000449249 707 ntTSL 529.37■■■□□ 2.299e-8■■■■□ 21.7
UPF1Q92900 USP20-209ENST00000496927 646 ntTSL 516.77■□□□□ 0.282e-6■■■■□ 21.7
UPF1Q92900 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.242e-7■■■■□ 21.7
UPF1Q92900 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.32■□□□□ 0.042e-7■■■■□ 21.7
UPF1Q92900 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC13.99□□□□□ -0.172e-7■■■■□ 21.7
UPF1Q92900 LCLAT1-211ENST00000491680 1610 ntTSL 215.35■□□□□ 0.054e-6■■■■□ 21.7
UPF1Q92900 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC27.47■■□□□ 1.991e-7■■■■□ 21.6
UPF1Q92900 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC22.74■■□□□ 1.231e-7■■■■□ 21.6
UPF1Q92900 YPEL2-201ENST00000312655 5217 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.612e-9■■■■□ 21.6
UPF1Q92900 HEIH-201ENST00000623091 1652 ntBASIC24.26■■□□□ 1.472e-8■■■■□ 21.6
UPF1Q92900 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.255e-11■■■■□ 21.6
UPF1Q92900 RAVER1-204ENST00000592208 4693 ntTSL 1 (best)14.95□□□□□ -0.025e-11■■■■□ 21.6
UPF1Q92900 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.285e-11■■■■□ 21.6
UPF1Q92900 RAVER1-208ENST00000617231 3501 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.335e-11■■■■□ 21.6
UPF1Q92900 RAVER1-201ENST00000293677 3595 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.345e-11■■■■□ 21.6
UPF1Q92900 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.031e-6■■■■□ 21.6
UPF1Q92900 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.071e-6■■■■□ 21.6
UPF1Q92900 E2F6-204ENST00000428221 3139 ntTSL 1 (best)16.61■□□□□ 0.256e-8■■■■□ 21.6
UPF1Q92900 E2F6-206ENST00000444832 3296 ntTSL 1 (best)15.65■□□□□ 0.16e-8■■■■□ 21.6
UPF1Q92900 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.62■□□□□ 0.096e-8■■■■□ 21.6
UPF1Q92900 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.44■□□□□ 0.066e-8■■■■□ 21.6
UPF1Q92900 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.39■□□□□ 0.056e-8■■■■□ 21.6
UPF1Q92900 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.016e-8■■■■□ 21.6
UPF1Q92900 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.28■□□□□ 0.521e-6■■■■□ 21.6
UPF1Q92900 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.21■□□□□ 0.351e-6■■■■□ 21.6
UPF1Q92900 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.31■□□□□ 0.21e-6■■■■□ 21.6
UPF1Q92900 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC8.45□□□□□ -1.061e-6■■■■□ 21.6
UPF1Q92900 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.061e-6■■■■□ 21.6
UPF1Q92900 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC7.95□□□□□ -1.141e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-266ENST00000568908 3852 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.554e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-216ENST00000562631 4042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.644e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-214ENST00000562558 3858 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.664e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-201ENST00000388813 3925 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.714e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-255ENST00000567835 3741 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.714e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-202ENST00000456916 3860 ntTSL 2 BASIC10.41□□□□□ -0.744e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-267ENST00000568909 4254 ntAPPRIS P4 TSL 5 BASIC10.34□□□□□ -0.754e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-232ENST00000564907 3655 ntTSL 59.79□□□□□ -0.844e-6■■■■□ 21.6
UPF1Q92900 ADGRG1-203ENST00000540164 3820 ntAPPRIS ALT1 TSL 1 (best) BASIC9.41□□□□□ -0.94e-6■■■■□ 21.6
UPF1Q92900 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.533e-7■■■■□ 21.6
UPF1Q92900 C4orf3-201ENST00000399075 2960 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.571e-7■■■■□ 21.6
UPF1Q92900 GTF2F1-202ENST00000593678 1705 ntTSL 217.73■□□□□ 0.432e-17■■■■□ 21.6
UPF1Q92900 MRPS18B-207ENST00000472229 1409 ntTSL 313.66□□□□□ -0.221e-7■■■■□ 21.6
UPF1Q92900 MRPS18B-206ENST00000259873 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.31e-7■■■■□ 21.6
Retrieved 100 of 15,879 protein–RNA pairs in 116.1 ms