RNA–Protein interactions for RNA: ENST00000399075.6

C4orf3-201, Transcript of chromosome 4 open reading frame 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene C4orf3, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4orf3-201ENST00000399075 NISCHQ9Y2I1 1504 aa23.98■■□□□ 1.43
C4orf3-201ENST00000399075 CCDC180Q9P1Z9 1646 aa20.57■□□□□ 0.88
C4orf3-201ENST00000399075 ZCCHC6Q5VYS8 1495 aaKnown RBP20.31■□□□□ 0.84
C4orf3-201ENST00000399075 SHROOM4Q9ULL8 1493 aa20.07■□□□□ 0.8
C4orf3-201ENST00000399075 DCAF1Q9Y4B6 1507 aa19.84■□□□□ 0.77
C4orf3-201ENST00000399075 SUPT5HO00267 1087 aaKnown RBP19.66■□□□□ 0.74
C4orf3-201ENST00000399075 DCAF8L2P0C7V8 631 aa19.52■□□□□ 0.71
C4orf3-201ENST00000399075 MYO15BQ96JP2 1530 aa19.32■□□□□ 0.68
C4orf3-201ENST00000399075 CHIC1Q5VXU3 224 aa19.23■□□□□ 0.67
C4orf3-201ENST00000399075 ABCC9O60706 1549 aa19.16■□□□□ 0.66
C4orf3-201ENST00000399075 SCRIBQ14160 1630 aa19.03■□□□□ 0.64
C4orf3-201ENST00000399075 NACADO15069 1562 aa18.97■□□□□ 0.63
C4orf3-201ENST00000399075 RSF1Q96T23 1441 aaPredicted RBP18.89■□□□□ 0.62
C4orf3-201ENST00000399075 RB1CC1Q8TDY2 1594 aa18.76■□□□□ 0.59
C4orf3-201ENST00000399075 CECR2Q9BXF3 1484 aa18.58■□□□□ 0.57
C4orf3-201ENST00000399075 MROH2BQ7Z745 1585 aa18.56■□□□□ 0.56
C4orf3-201ENST00000399075 HRCP23327 699 aa18.53■□□□□ 0.56
C4orf3-201ENST00000399075 LOC105371045A0A1W2PR82 267 aa18.51■□□□□ 0.55
C4orf3-201ENST00000399075 BAZ1AQ9NRL2 1556 aaPredicted RBP18.46■□□□□ 0.55
C4orf3-201ENST00000399075 WIZO95785 1651 aa18.46■□□□□ 0.55
C4orf3-201ENST00000399075 PCGF6Q9BYE7 350 aa18.44■□□□□ 0.54
C4orf3-201ENST00000399075 TRIM41Q8WV44 630 aa18.42■□□□□ 0.54
C4orf3-201ENST00000399075 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.53
C4orf3-201ENST00000399075 EIF4G1Q04637 1599 aaKnown RBP18.32■□□□□ 0.52
C4orf3-201ENST00000399075 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
C4orf3-201ENST00000399075 TOP2AP11388 1531 aaKnown RBP18.28■□□□□ 0.52
C4orf3-201ENST00000399075 TRIM26Q12899 539 aaPredicted RBP18.26■□□□□ 0.51
C4orf3-201ENST00000399075 SMARCA2P51531 1590 aa18.14■□□□□ 0.49
C4orf3-201ENST00000399075 FAM9AQ8IZU1 332 aaPredicted RBP18.11■□□□□ 0.49
C4orf3-201ENST00000399075 CCDC88BA6NC98 1476 aa18.1■□□□□ 0.49
C4orf3-201ENST00000399075 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
C4orf3-201ENST00000399075 PEG3Q9GZU2 1588 aa18.04■□□□□ 0.48
C4orf3-201ENST00000399075 PELP1Q8IZL8 1130 aaKnown RBP17.98■□□□□ 0.47
C4orf3-201ENST00000399075 ABCC8Q09428 1581 aa17.96■□□□□ 0.47
C4orf3-201ENST00000399075 PPARGC1BQ86YN6 1023 aaKnown RBP17.96■□□□□ 0.47
C4orf3-201ENST00000399075 ZEB1P37275 1124 aaPredicted RBP17.91■□□□□ 0.46
C4orf3-201ENST00000399075 EEA1Q15075 1411 aa17.88■□□□□ 0.45
C4orf3-201ENST00000399075 PABPN1Q86U42 306 aaKnown RBP eCLIP17.86■□□□□ 0.452e-6■■□□□ 13.9
C4orf3-201ENST00000399075 EHMT2Q96KQ7 1210 aa17.82■□□□□ 0.44
C4orf3-201ENST00000399075 WRNQ14191 1432 aaPredicted RBP eCLIP17.8■□□□□ 0.44
C4orf3-201ENST00000399075 ATAD2BQ9ULI0 1458 aa17.8■□□□□ 0.44
C4orf3-201ENST00000399075 SOGA1O94964 1423 aa17.77■□□□□ 0.44
C4orf3-201ENST00000399075 TNIKQ9UKE5 1360 aa17.76■□□□□ 0.43
C4orf3-201ENST00000399075 BAZ1BQ9UIG0 1483 aaKnown RBP17.73■□□□□ 0.43
C4orf3-201ENST00000399075 CEP162Q5TB80 1403 aa17.72■□□□□ 0.43
C4orf3-201ENST00000399075 CSRNP3Q8WYN3 585 aa17.7■□□□□ 0.42
C4orf3-201ENST00000399075 GOLGA3Q08378 1498 aa17.67■□□□□ 0.42
C4orf3-201ENST00000399075 SYNJ1O43426 1573 aa17.67■□□□□ 0.42
C4orf3-201ENST00000399075 RUSC2Q8N2Y8 1516 aa17.66■□□□□ 0.42
C4orf3-201ENST00000399075 KIF21BO75037 1637 aa17.63■□□□□ 0.41
C4orf3-201ENST00000399075 CEP164Q9UPV0 1460 aa17.6■□□□□ 0.41
C4orf3-201ENST00000399075 HMGXB3Q12766 1538 aa17.56■□□□□ 0.4
C4orf3-201ENST00000399075 TOP2BQ02880 1626 aa17.54■□□□□ 0.4
C4orf3-201ENST00000399075 UBTFP17480 764 aaKnown RBP17.52■□□□□ 0.4
C4orf3-201ENST00000399075 MYT1Q01538 1121 aa17.52■□□□□ 0.39
C4orf3-201ENST00000399075 BIVM-ERCC5R4GMW8 1640 aa17.51■□□□□ 0.39
C4orf3-201ENST00000399075 NCAPD3P42695 1498 aa17.51■□□□□ 0.39
C4orf3-201ENST00000399075 CLIP1P30622 1438 aa17.41■□□□□ 0.38
C4orf3-201ENST00000399075 CCER1Q8TC90 406 aaPredicted RBP17.4■□□□□ 0.38
C4orf3-201ENST00000399075 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.4■□□□□ 0.38
C4orf3-201ENST00000399075 RAPGEF2Q9Y4G8 1499 aa17.39■□□□□ 0.37
C4orf3-201ENST00000399075 ERICH3Q5RHP9 1530 aa17.37■□□□□ 0.37
C4orf3-201ENST00000399075 VPS8Q8N3P4 1428 aa17.37■□□□□ 0.37
C4orf3-201ENST00000399075 CFTRP13569 1480 aa17.33■□□□□ 0.37
C4orf3-201ENST00000399075 PRXQ9BXM0 1461 aa17.32■□□□□ 0.36
C4orf3-201ENST00000399075 CUX1P39880 1505 aa17.31■□□□□ 0.36
C4orf3-201ENST00000399075 PRDM2Q13029 1718 aa17.31■□□□□ 0.36
C4orf3-201ENST00000399075 TTBK1Q5TCY1 1321 aaPredicted RBP17.27■□□□□ 0.36
C4orf3-201ENST00000399075 KIF27Q86VH2 1401 aa17.23■□□□□ 0.35
C4orf3-201ENST00000399075 APLP2Q06481 763 aa17.17■□□□□ 0.34
C4orf3-201ENST00000399075 ARAP1Q96P48 1450 aa17.17■□□□□ 0.34
C4orf3-201ENST00000399075 CADPSQ9ULU8 1353 aa17.11■□□□□ 0.33
C4orf3-201ENST00000399075 DIEXFQ68CQ4 756 aaKnown RBP17.04■□□□□ 0.32
C4orf3-201ENST00000399075 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
C4orf3-201ENST00000399075 CC2D2AQ9P2K1 1620 aa17.03■□□□□ 0.32
C4orf3-201ENST00000399075 ARHGAP35Q9NRY4 1499 aa17.03■□□□□ 0.32
C4orf3-201ENST00000399075 CUX2O14529 1486 aa17.02■□□□□ 0.32
C4orf3-201ENST00000399075 RANGAP1P46060 587 aaPredicted RBP17.01■□□□□ 0.31
C4orf3-201ENST00000399075 IGF1RP08069 1367 aa17■□□□□ 0.31
C4orf3-201ENST00000399075 FGD5Q6ZNL6 1462 aa17■□□□□ 0.31
C4orf3-201ENST00000399075 ZNF316A6NFI3 1004 aaPredicted RBP16.99■□□□□ 0.31
C4orf3-201ENST00000399075 RRBP1Q9P2E9 1410 aaKnown RBP16.99■□□□□ 0.31
C4orf3-201ENST00000399075 CLSPNQ9HAW4 1339 aa16.97■□□□□ 0.31
C4orf3-201ENST00000399075 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.31
C4orf3-201ENST00000399075 MAP3K1Q13233 1512 aa16.96■□□□□ 0.3
C4orf3-201ENST00000399075 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
C4orf3-201ENST00000399075 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
C4orf3-201ENST00000399075 KANK4Q5T7N3 995 aaPredicted RBP16.92■□□□□ 0.3
C4orf3-201ENST00000399075 DNMBPQ6XZF7 1577 aa16.92■□□□□ 0.3
C4orf3-201ENST00000399075 ACIN1Q9UKV3 1341 aaKnown RBP16.88■□□□□ 0.29
C4orf3-201ENST00000399075 PRKCSHP14314 528 aaPredicted RBP16.88■□□□□ 0.29
C4orf3-201ENST00000399075 TIAM1Q13009 1591 aa16.88■□□□□ 0.29
C4orf3-201ENST00000399075 ABCA10Q8WWZ4 1543 aa16.87■□□□□ 0.29
C4orf3-201ENST00000399075 DHX57Q6P158 1386 aaKnown RBP16.87■□□□□ 0.29
C4orf3-201ENST00000399075 CCNB3Q8WWL7 1395 aa16.86■□□□□ 0.29
C4orf3-201ENST00000399075 CENPBP07199 599 aaPredicted RBP16.84■□□□□ 0.29
C4orf3-201ENST00000399075 TOPBP1Q92547 1522 aa16.84■□□□□ 0.29
C4orf3-201ENST00000399075 CUL7Q14999 1698 aa16.83■□□□□ 0.28
C4orf3-201ENST00000399075 FHAD1B1AJZ9 1412 aa16.82■□□□□ 0.28
C4orf3-201ENST00000399075 POLA1P09884 1462 aaPredicted RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms