Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM3P62310 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LSM3P62310 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LSM3P62310 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.62■□□□□ 0.41
LSM3P62310 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.62■□□□□ 0.41
LSM3P62310 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.62■□□□□ 0.41
LSM3P62310 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LSM3P62310 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LSM3P62310 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
LSM3P62310 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LSM3P62310 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.61■□□□□ 0.41
LSM3P62310 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
LSM3P62310 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.61■□□□□ 0.41
LSM3P62310 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LSM3P62310 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LSM3P62310 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LSM3P62310 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.6■□□□□ 0.41
LSM3P62310 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
LSM3P62310 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LSM3P62310 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.6■□□□□ 0.41
LSM3P62310 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.6■□□□□ 0.41
LSM3P62310 AC133561.4-201ENST00000566112 224 ntBASIC17.6■□□□□ 0.41
LSM3P62310 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.6■□□□□ 0.41
LSM3P62310 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.6■□□□□ 0.41
LSM3P62310 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LSM3P62310 AL354751.1-201ENST00000412768 1863 ntBASIC17.6■□□□□ 0.41
LSM3P62310 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.6■□□□□ 0.41
LSM3P62310 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.6■□□□□ 0.41
LSM3P62310 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LSM3P62310 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 AC139713.2-201ENST00000641328 2723 ntBASIC17.59■□□□□ 0.41
LSM3P62310 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 AC067852.2-201ENST00000590513 2313 ntBASIC17.59■□□□□ 0.41
LSM3P62310 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
LSM3P62310 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.59■□□□□ 0.41
LSM3P62310 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.59■□□□□ 0.41
LSM3P62310 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.59■□□□□ 0.41
LSM3P62310 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.59■□□□□ 0.41
LSM3P62310 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LSM3P62310 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.59■□□□□ 0.41
LSM3P62310 BICD1-207ENST00000551848 1962 ntBASIC17.59■□□□□ 0.41
LSM3P62310 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.58■□□□□ 0.41
LSM3P62310 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.58■□□□□ 0.41
LSM3P62310 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LSM3P62310 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LSM3P62310 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.58■□□□□ 0.4
LSM3P62310 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.58■□□□□ 0.4
LSM3P62310 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 AC008175.2-201ENST00000612840 297 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms