Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL1P09341 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CXCL1P09341 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CXCL1P09341 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL1P09341 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.13■□□□□ 0.01
CXCL1P09341 AC005224.4-201ENST00000583262 1652 ntBASIC15.13■□□□□ 0.01
CXCL1P09341 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
CXCL1P09341 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CXCL1P09341 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL1P09341 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.13■□□□□ 0.01
CXCL1P09341 BX119927.1-201ENST00000636596 1552 ntBASIC15.13■□□□□ 0.01
CXCL1P09341 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.13■□□□□ 0.01
CXCL1P09341 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CXCL1P09341 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.13■□□□□ 0.01
CXCL1P09341 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL1P09341 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CXCL1P09341 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL1P09341 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL1P09341 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
CXCL1P09341 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC15.12■□□□□ 0.01
CXCL1P09341 SRR-208ENST00000576848 588 ntTSL 4 BASIC15.12■□□□□ 0.01
CXCL1P09341 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.12■□□□□ 0.01
CXCL1P09341 AP004607.4-201ENST00000530158 1459 ntBASIC15.12■□□□□ 0.01
CXCL1P09341 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL1P09341 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CXCL1P09341 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 AC008894.3-201ENST00000624324 3103 ntBASIC15.12■□□□□ 0.01
CXCL1P09341 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL1P09341 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL1P09341 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 PXK-203ENST00000383715 1756 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
CXCL1P09341 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC15.11■□□□□ 0.01
CXCL1P09341 PTMA-205ENST00000410064 814 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 RPP21-222ENST00000433076 577 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 IGHV3-19-201ENST00000521488 291 ntBASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms