Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.25■□□□□ 0.35
SGCEO43556 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.25■□□□□ 0.35
SGCEO43556 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
SGCEO43556 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.25■□□□□ 0.35
SGCEO43556 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.25■□□□□ 0.35
SGCEO43556 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SGCEO43556 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.25■□□□□ 0.35
SGCEO43556 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SGCEO43556 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.24■□□□□ 0.35
SGCEO43556 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
SGCEO43556 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SGCEO43556 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.24■□□□□ 0.35
SGCEO43556 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.24■□□□□ 0.35
SGCEO43556 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.24■□□□□ 0.35
SGCEO43556 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.24■□□□□ 0.35
SGCEO43556 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.24■□□□□ 0.35
SGCEO43556 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SGCEO43556 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.23■□□□□ 0.35
SGCEO43556 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.23■□□□□ 0.35
SGCEO43556 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.23■□□□□ 0.35
SGCEO43556 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.23■□□□□ 0.35
SGCEO43556 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.23■□□□□ 0.35
SGCEO43556 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.23■□□□□ 0.35
SGCEO43556 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.23■□□□□ 0.35
SGCEO43556 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.23■□□□□ 0.35
SGCEO43556 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.23■□□□□ 0.35
SGCEO43556 SOX15-203ENST00000570788 1093 ntBASIC17.23■□□□□ 0.35
SGCEO43556 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.23■□□□□ 0.35
SGCEO43556 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.23■□□□□ 0.35
SGCEO43556 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SGCEO43556 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.23■□□□□ 0.35
SGCEO43556 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.23■□□□□ 0.35
SGCEO43556 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SGCEO43556 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SGCEO43556 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SGCEO43556 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SGCEO43556 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 AC124283.5-201ENST00000624661 1809 ntBASIC17.22■□□□□ 0.35
SGCEO43556 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SGCEO43556 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SGCEO43556 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.22■□□□□ 0.35
SGCEO43556 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.22■□□□□ 0.35
SGCEO43556 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.22■□□□□ 0.35
SGCEO43556 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.22■□□□□ 0.35
SGCEO43556 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.22■□□□□ 0.35
SGCEO43556 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.22■□□□□ 0.35
SGCEO43556 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms