Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 KRT18P16-201ENST00000510337 1294 ntBASIC19.46■□□□□ 0.71
VPS35Q96QK1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS35Q96QK1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
VPS35Q96QK1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS35Q96QK1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS35Q96QK1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS35Q96QK1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS35Q96QK1 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 TUBB8P6-201ENST00000436895 1288 ntBASIC19.42■□□□□ 0.7
VPS35Q96QK1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms