Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 AC012354.3-201ENST00000623734 483 ntBASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 TSPY13P-201ENST00000338964 914 ntBASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 AC139795.1-202ENST00000500444 432 ntBASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 OR6D1P-202ENST00000641007 5290 ntBASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CLRN3Q8NCR9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 SPCS2P3-201ENST00000500401 656 ntBASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.61■□□□□ 0.09
CLRN3Q8NCR9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
CLRN3Q8NCR9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms