Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 PTCHD3P2-201ENST00000424937 1205 ntBASIC14.73□□□□□ -0.05
HLA-DQA1P01909 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 AC009237.14-201ENST00000609975 1594 ntBASIC14.73□□□□□ -0.05
HLA-DQA1P01909 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 RNF146-206ENST00000480444 843 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 AC010525.1-201ENST00000585559 441 ntBASIC14.72□□□□□ -0.05
HLA-DQA1P01909 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DQA1P01909 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 FXN-202ENST00000396364 980 ntTSL 5 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 DUX4L19-201ENST00000557448 1267 ntBASIC14.71□□□□□ -0.05
HLA-DQA1P01909 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DQA1P01909 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC14.71□□□□□ -0.06
HLA-DQA1P01909 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DQA1P01909 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC14.71□□□□□ -0.06
HLA-DQA1P01909 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DQA1P01909 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DQA1P01909 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.7□□□□□ -0.06
HLA-DQA1P01909 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 WIZP1-201ENST00000531444 2299 ntBASIC14.7□□□□□ -0.06
HLA-DQA1P01909 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 AP005435.1-201ENST00000529293 1178 ntBASIC14.7□□□□□ -0.06
HLA-DQA1P01909 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms