Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SHOX2O60902 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.62■□□□□ 0.73
SHOX2O60902 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.62■□□□□ 0.73
SHOX2O60902 AC136469.2-201ENST00000623944 1028 ntBASIC19.62■□□□□ 0.73
SHOX2O60902 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.62■□□□□ 0.73
SHOX2O60902 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHOX2O60902 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.61■□□□□ 0.73
SHOX2O60902 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.61■□□□□ 0.73
SHOX2O60902 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.61■□□□□ 0.73
SHOX2O60902 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.61■□□□□ 0.73
SHOX2O60902 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.61■□□□□ 0.73
SHOX2O60902 SIRPAP1-201ENST00000448467 1770 ntBASIC19.61■□□□□ 0.73
SHOX2O60902 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.61■□□□□ 0.73
SHOX2O60902 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
SHOX2O60902 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHOX2O60902 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SHOX2O60902 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHOX2O60902 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHOX2O60902 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SHOX2O60902 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SHOX2O60902 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.6■□□□□ 0.73
SHOX2O60902 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SHOX2O60902 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.6■□□□□ 0.73
SHOX2O60902 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 AC124067.4-201ENST00000519691 2379 ntBASIC19.6■□□□□ 0.73
SHOX2O60902 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.6■□□□□ 0.73
SHOX2O60902 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SHOX2O60902 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.6■□□□□ 0.73
SHOX2O60902 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SHOX2O60902 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.6■□□□□ 0.73
SHOX2O60902 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.6■□□□□ 0.73
SHOX2O60902 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 LINC00896-202ENST00000609602 2128 ntBASIC19.6■□□□□ 0.73
SHOX2O60902 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHOX2O60902 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.6■□□□□ 0.73
SHOX2O60902 AC141586.5-201ENST00000624546 2050 ntBASIC19.6■□□□□ 0.73
SHOX2O60902 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SHOX2O60902 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
SHOX2O60902 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
SHOX2O60902 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
SHOX2O60902 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.59■□□□□ 0.73
SHOX2O60902 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.59■□□□□ 0.73
SHOX2O60902 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 AC008175.2-201ENST00000612840 297 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms