Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 AP000974.1-201ENST00000623909 2387 ntBASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 GUSBP6-202ENST00000438529 1198 ntBASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCHCR1Q8TD31 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 HLA-G-202ENST00000376815 851 ntBASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 HLA-G-203ENST00000376818 1127 ntBASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 MIR4758-201ENST00000577688 71 ntBASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.41■□□□□ 0.86
CCHCR1Q8TD31 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.4■□□□□ 0.86
CCHCR1Q8TD31 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.39■□□□□ 0.86
CCHCR1Q8TD31 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCHCR1Q8TD31 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.39■□□□□ 0.86
CCHCR1Q8TD31 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCHCR1Q8TD31 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 AC105020.6-201ENST00000621523 1217 ntBASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCHCR1Q8TD31 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCHCR1Q8TD31 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.38■□□□□ 0.85
CCHCR1Q8TD31 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCHCR1Q8TD31 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms