Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 AC018445.3-201ENST00000624177 1945 ntBASIC18.64■□□□□ 0.57
RAE1P78406 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RAE1P78406 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
RAE1P78406 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.63■□□□□ 0.57
RAE1P78406 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RAE1P78406 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.63■□□□□ 0.57
RAE1P78406 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.63■□□□□ 0.57
RAE1P78406 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RAE1P78406 AC120498.8-201ENST00000614275 531 ntBASIC18.63■□□□□ 0.57
RAE1P78406 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RAE1P78406 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 AC098818.2-201ENST00000564925 2320 ntBASIC18.63■□□□□ 0.57
RAE1P78406 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RAE1P78406 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RAE1P78406 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAE1P78406 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.62■□□□□ 0.57
RAE1P78406 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 SOX15-203ENST00000570788 1093 ntBASIC18.62■□□□□ 0.57
RAE1P78406 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.62■□□□□ 0.57
RAE1P78406 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.62■□□□□ 0.57
RAE1P78406 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 BX323043.1-201ENST00000641006 1765 ntBASIC18.62■□□□□ 0.57
RAE1P78406 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.62■□□□□ 0.57
RAE1P78406 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.62■□□□□ 0.57
RAE1P78406 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAE1P78406 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 HLA-L-209ENST00000420110 1011 ntBASIC18.61■□□□□ 0.57
RAE1P78406 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
RAE1P78406 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.61■□□□□ 0.57
RAE1P78406 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RAE1P78406 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAE1P78406 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RAE1P78406 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RAE1P78406 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RAE1P78406 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RAE1P78406 AP000974.1-201ENST00000623909 2387 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms