Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VIMP08670 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.7■□□□□ 0.74
VIMP08670 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.69■□□□□ 0.74
VIMP08670 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
VIMP08670 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 AC135050.7-201ENST00000624508 2218 ntBASIC19.69■□□□□ 0.74
VIMP08670 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
VIMP08670 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.69■□□□□ 0.74
VIMP08670 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VIMP08670 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
VIMP08670 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.68■□□□□ 0.74
VIMP08670 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.68■□□□□ 0.74
VIMP08670 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 MIR4466-201ENST00000606121 54 ntBASIC19.68■□□□□ 0.74
VIMP08670 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.68■□□□□ 0.74
VIMP08670 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VIMP08670 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VIMP08670 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VIMP08670 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VIMP08670 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 AC020916.1-201ENST00000587762 1774 ntBASIC19.67■□□□□ 0.74
VIMP08670 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.67■□□□□ 0.74
VIMP08670 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.67■□□□□ 0.74
VIMP08670 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.67■□□□□ 0.74
VIMP08670 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.67■□□□□ 0.74
VIMP08670 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 AC120498.10-201ENST00000621827 505 ntBASIC19.67■□□□□ 0.74
VIMP08670 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.67■□□□□ 0.74
VIMP08670 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.67■□□□□ 0.74
VIMP08670 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VIMP08670 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VIMP08670 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VIMP08670 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VIMP08670 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.66■□□□□ 0.74
VIMP08670 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.66■□□□□ 0.74
VIMP08670 MIR4767-201ENST00000582827 78 ntBASIC19.66■□□□□ 0.74
VIMP08670 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VIMP08670 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VIMP08670 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
VIMP08670 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms