Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.65■□□□□ 0.58
PDLIM1O00151 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.65■□□□□ 0.58
PDLIM1O00151 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.65■□□□□ 0.58
PDLIM1O00151 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.65■□□□□ 0.58
PDLIM1O00151 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.65■□□□□ 0.58
PDLIM1O00151 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.65■□□□□ 0.58
PDLIM1O00151 AC020763.4-201ENST00000623414 4170 ntBASIC18.65■□□□□ 0.58
PDLIM1O00151 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PDLIM1O00151 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM1O00151 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PDLIM1O00151 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
PDLIM1O00151 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.64■□□□□ 0.57
PDLIM1O00151 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
PDLIM1O00151 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM1O00151 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PDLIM1O00151 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.64■□□□□ 0.57
PDLIM1O00151 AC006015.1-201ENST00000429970 570 ntBASIC18.64■□□□□ 0.57
PDLIM1O00151 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM1O00151 IKBKGP1-201ENST00000612193 1073 ntBASIC18.64■□□□□ 0.57
PDLIM1O00151 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM1O00151 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM1O00151 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM1O00151 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.63■□□□□ 0.57
PDLIM1O00151 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.63■□□□□ 0.57
PDLIM1O00151 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.63■□□□□ 0.57
PDLIM1O00151 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 AC010141.2-201ENST00000452426 721 ntBASIC18.63■□□□□ 0.57
PDLIM1O00151 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM1O00151 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.63■□□□□ 0.57
PDLIM1O00151 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 AL356309.3-201ENST00000624132 1934 ntBASIC18.62■□□□□ 0.57
PDLIM1O00151 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PDLIM1O00151 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.62■□□□□ 0.57
PDLIM1O00151 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
PDLIM1O00151 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.62■□□□□ 0.57
PDLIM1O00151 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.62■□□□□ 0.57
PDLIM1O00151 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 AP001160.3-201ENST00000601484 763 ntBASIC18.62■□□□□ 0.57
PDLIM1O00151 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PDLIM1O00151 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.62■□□□□ 0.57
PDLIM1O00151 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.62■□□□□ 0.57
PDLIM1O00151 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM1O00151 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.61■□□□□ 0.57
PDLIM1O00151 AC141586.5-201ENST00000624546 2050 ntBASIC18.61■□□□□ 0.57
PDLIM1O00151 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 AC116050.2-201ENST00000612102 1779 ntBASIC18.61■□□□□ 0.57
PDLIM1O00151 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PDLIM1O00151 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.61■□□□□ 0.57
PDLIM1O00151 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.61■□□□□ 0.57
PDLIM1O00151 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 AL139384.1-201ENST00000612143 3047 ntBASIC18.61■□□□□ 0.57
PDLIM1O00151 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 AC011270.2-201ENST00000624293 2550 ntBASIC18.61■□□□□ 0.57
PDLIM1O00151 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.61■□□□□ 0.57
PDLIM1O00151 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms