Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USH1CQ9Y6N9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 FAM21FP-204ENST00000608637 956 ntBASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USH1CQ9Y6N9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L2-201ENST00000561772 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L6-201ENST00000626483 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L1-201ENST00000627662 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L8-201ENST00000629013 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L3-201ENST00000630187 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L7-201ENST00000630678 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 DUX4L5-201ENST00000630834 1275 ntBASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USH1CQ9Y6N9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 MIR6084-201ENST00000622012 110 ntBASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USH1CQ9Y6N9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 IRS3P-201ENST00000223076 1006 ntBASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms