Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 AC091799.1-201ENST00000422823 811 ntBASIC17.95■□□□□ 0.46
DDX28Q9NUL7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 AL158211.5-201ENST00000623583 2518 ntBASIC17.94■□□□□ 0.46
DDX28Q9NUL7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DDX28Q9NUL7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 UBE2DNL-204ENST00000602536 740 ntBASIC17.93■□□□□ 0.46
DDX28Q9NUL7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DDX28Q9NUL7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DDX28Q9NUL7 NTF6G-201ENST00000591094 616 ntBASIC17.92■□□□□ 0.46
DDX28Q9NUL7 MYCNOS-205ENST00000641950 531 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms