Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 HLA-L-209ENST00000420110 1011 ntBASIC19.64■□□□□ 0.73
TREX1Q9NSU2 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.64■□□□□ 0.73
TREX1Q9NSU2 AC120498.8-201ENST00000614275 531 ntBASIC19.64■□□□□ 0.73
TREX1Q9NSU2 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TREX1Q9NSU2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TREX1Q9NSU2 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 SOX15-203ENST00000570788 1093 ntBASIC19.62■□□□□ 0.73
TREX1Q9NSU2 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 AL121906.2-201ENST00000621597 723 ntBASIC19.62■□□□□ 0.73
TREX1Q9NSU2 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.62■□□□□ 0.73
TREX1Q9NSU2 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 AL355802.2-201ENST00000402069 882 ntBASIC19.61■□□□□ 0.73
TREX1Q9NSU2 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREX1Q9NSU2 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 AC008687.6-201ENST00000596318 630 ntBASIC19.6■□□□□ 0.73
TREX1Q9NSU2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TREX1Q9NSU2 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 AL032819.2-201ENST00000624543 2162 ntBASIC19.59■□□□□ 0.73
TREX1Q9NSU2 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREX1Q9NSU2 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms