Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX2Q9NPC8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 AC087289.5-201ENST00000586076 3175 ntBASIC21.13■□□□□ 0.97
SIX2Q9NPC8 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX2Q9NPC8 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 AC098818.2-201ENST00000564925 2320 ntBASIC21.12■□□□□ 0.97
SIX2Q9NPC8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 AC018445.3-201ENST00000624177 1945 ntBASIC21.12■□□□□ 0.97
SIX2Q9NPC8 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SIX2Q9NPC8 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.11■□□□□ 0.97
SIX2Q9NPC8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.11■□□□□ 0.97
SIX2Q9NPC8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 BX323043.1-201ENST00000641006 1765 ntBASIC21.1■□□□□ 0.97
SIX2Q9NPC8 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 SOX15-203ENST00000570788 1093 ntBASIC21.1■□□□□ 0.97
SIX2Q9NPC8 AC120498.8-201ENST00000614275 531 ntBASIC21.1■□□□□ 0.97
SIX2Q9NPC8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SIX2Q9NPC8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX2Q9NPC8 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms