Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.3■□□□□ 0.36
MMP28Q9H239 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
MMP28Q9H239 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MMP28Q9H239 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.29■□□□□ 0.36
MMP28Q9H239 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.29■□□□□ 0.36
MMP28Q9H239 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 AC090340.1-201ENST00000620778 4980 ntBASIC17.29■□□□□ 0.36
MMP28Q9H239 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MMP28Q9H239 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.29■□□□□ 0.36
MMP28Q9H239 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.29■□□□□ 0.36
MMP28Q9H239 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MMP28Q9H239 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
MMP28Q9H239 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.29■□□□□ 0.36
MMP28Q9H239 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MMP28Q9H239 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MMP28Q9H239 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
MMP28Q9H239 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MMP28Q9H239 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.28■□□□□ 0.36
MMP28Q9H239 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.28■□□□□ 0.36
MMP28Q9H239 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MMP28Q9H239 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 AC079140.4-201ENST00000507448 529 ntBASIC17.28■□□□□ 0.36
MMP28Q9H239 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.28■□□□□ 0.36
MMP28Q9H239 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MMP28Q9H239 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.28■□□□□ 0.36
MMP28Q9H239 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MMP28Q9H239 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
MMP28Q9H239 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 AC135050.7-201ENST00000624508 2218 ntBASIC17.28■□□□□ 0.36
MMP28Q9H239 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MMP28Q9H239 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MMP28Q9H239 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.27■□□□□ 0.36
MMP28Q9H239 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.27■□□□□ 0.36
MMP28Q9H239 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
MMP28Q9H239 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
MMP28Q9H239 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
MMP28Q9H239 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.27■□□□□ 0.36
MMP28Q9H239 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
MMP28Q9H239 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.27■□□□□ 0.36
MMP28Q9H239 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.27■□□□□ 0.36
MMP28Q9H239 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.27■□□□□ 0.36
MMP28Q9H239 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.27■□□□□ 0.36
MMP28Q9H239 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
MMP28Q9H239 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MMP28Q9H239 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
MMP28Q9H239 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MMP28Q9H239 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
MMP28Q9H239 CROCCP3-202ENST00000420820 1947 ntBASIC17.27■□□□□ 0.35
MMP28Q9H239 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.27■□□□□ 0.35
MMP28Q9H239 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MMP28Q9H239 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.27■□□□□ 0.35
MMP28Q9H239 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
MMP28Q9H239 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.26■□□□□ 0.35
MMP28Q9H239 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms