Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 CROCCP3-202ENST00000420820 1947 ntBASIC14.37□□□□□ -0.11
SMKR1H3BMG3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SMKR1H3BMG3 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 GRAMD4P2-201ENST00000423297 1097 ntBASIC14.36□□□□□ -0.11
SMKR1H3BMG3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.36□□□□□ -0.11
SMKR1H3BMG3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 AC009237.14-201ENST00000609975 1594 ntBASIC14.35□□□□□ -0.11
SMKR1H3BMG3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 AC120498.10-201ENST00000621827 505 ntBASIC14.35□□□□□ -0.11
SMKR1H3BMG3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 AL133373.2-201ENST00000623187 2828 ntBASIC14.35□□□□□ -0.11
SMKR1H3BMG3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SMKR1H3BMG3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 SERP1-208ENST00000491660 830 ntTSL 2 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 AC131281.2-201ENST00000520478 145 ntBASIC14.34□□□□□ -0.11
SMKR1H3BMG3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 AL035685.1-201ENST00000636663 812 ntBASIC14.34□□□□□ -0.11
SMKR1H3BMG3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.34□□□□□ -0.11
SMKR1H3BMG3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms