Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VCX3AQ9NNX9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 AL139384.1-201ENST00000612143 3047 ntBASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 MKRN4P-201ENST00000444706 1521 ntBASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VCX3AQ9NNX9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
VCX3AQ9NNX9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.39■□□□□ 0.54
VCX3AQ9NNX9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
VCX3AQ9NNX9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 MIR4508-201ENST00000584178 70 ntBASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCX3AQ9NNX9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 TREX1-205ENST00000625293 1783 ntBASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 CROCCP3-202ENST00000420820 1947 ntBASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCX3AQ9NNX9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCX3AQ9NNX9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms