Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.32e-20■■□□□ 12.8
DDX55Q8NHQ9 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC16.84■□□□□ 0.294e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.282e-20■■□□□ 12.8
DDX55Q8NHQ9 ABCF1-206ENST00000479542 893 ntTSL 216.76■□□□□ 0.272e-6■■□□□ 12.8
DDX55Q8NHQ9 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.71■□□□□ 0.273e-7■■□□□ 12.8
DDX55Q8NHQ9 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.61■□□□□ 0.252e-6■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-211ENST00000586921 569 ntTSL 516.55■□□□□ 0.242e-6■■□□□ 12.8
DDX55Q8NHQ9 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.36■□□□□ 0.212e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-214ENST00000624474 678 ntTSL 515.85■□□□□ 0.132e-6■■□□□ 12.8
DDX55Q8NHQ9 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.12e-6■■□□□ 12.8
DDX55Q8NHQ9 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.083e-7■■□□□ 12.8
DDX55Q8NHQ9 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.45■□□□□ 0.062e-6■■□□□ 12.8
DDX55Q8NHQ9 SGSH-214ENST00000575484 565 ntTSL 315.42■□□□□ 0.064e-9■■□□□ 12.8
DDX55Q8NHQ9 MAN2C1-212ENST00000563441 2664 ntTSL 1 (best)15.4■□□□□ 0.062e-6■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-219ENST00000592604 2940 ntTSL 1 (best)15.33■□□□□ 0.042e-6■■□□□ 12.8
DDX55Q8NHQ9 MYD88-202ENST00000416282 2730 ntTSL 1 (best)15.27■□□□□ 0.032e-6■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC15.25■□□□□ 0.032e-6■■□□□ 12.8
DDX55Q8NHQ9 TRIM47-202ENST00000585333 595 ntTSL 315.14■□□□□ 0.012e-6■■□□□ 12.8
DDX55Q8NHQ9 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 02e-6■■□□□ 12.8
DDX55Q8NHQ9 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.022e-6■■□□□ 12.8
DDX55Q8NHQ9 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.023e-7■■□□□ 12.8
DDX55Q8NHQ9 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.032e-6■■□□□ 12.8
DDX55Q8NHQ9 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.73□□□□□ -0.053e-7■■□□□ 12.8
DDX55Q8NHQ9 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.052e-6■■□□□ 12.8
DDX55Q8NHQ9 MYD88-204ENST00000421516 2687 ntAPPRIS ALT2 TSL 1 (best)14.68□□□□□ -0.062e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-205ENST00000437761 758 ntAPPRIS P2 TSL 4 BASIC14.52□□□□□ -0.092e-20■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC14.45□□□□□ -0.12e-6■■□□□ 12.8
DDX55Q8NHQ9 CDK12-209ENST00000584632 4165 ntTSL 514.3□□□□□ -0.129e-8■■□□□ 12.8
DDX55Q8NHQ9 ADSL-209ENST00000623287 856 ntTSL 514.24□□□□□ -0.132e-6■■□□□ 12.8
DDX55Q8NHQ9 WDTC1-205ENST00000491239 5149 ntTSL 214.18□□□□□ -0.142e-6■■□□□ 12.8
DDX55Q8NHQ9 AEN-203ENST00000557927 5039 ntTSL 1 (best)13.74□□□□□ -0.212e-6■■□□□ 12.8
DDX55Q8NHQ9 AL022238.4-201ENST00000639722 4563 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.212e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-214ENST00000534312 572 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.272e-20■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-208ENST00000585799 3842 ntTSL 213.33□□□□□ -0.272e-6■■□□□ 12.8
DDX55Q8NHQ9 WDTC1-203ENST00000447062 3115 ntTSL 213.31□□□□□ -0.282e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-219ENST00000636433 1444 ntTSL 513.24□□□□□ -0.292e-6■■□□□ 12.8
DDX55Q8NHQ9 SMARCA4-217ENST00000591595 3377 ntTSL 213□□□□□ -0.332e-6■■□□□ 12.8
DDX55Q8NHQ9 MDH1-202ENST00000409476 808 ntTSL 5 BASIC12.97□□□□□ -0.339e-8■■□□□ 12.8
DDX55Q8NHQ9 MDH1-203ENST00000409908 700 ntTSL 3 BASIC12.97□□□□□ -0.339e-8■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-211ENST00000492240 964 ntTSL 512.65□□□□□ -0.383e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-207ENST00000525763 789 ntTSL 312.55□□□□□ -0.42e-20■■□□□ 12.8
DDX55Q8NHQ9 CLPTM1L-204ENST00000503534 742 ntTSL 212.48□□□□□ -0.419e-8■■□□□ 12.8
DDX55Q8NHQ9 CD59-208ENST00000527577 686 ntAPPRIS P2 TSL 3 BASIC12.35□□□□□ -0.432e-20■■□□□ 12.8
DDX55Q8NHQ9 CD59-204ENST00000426650 741 ntAPPRIS P2 TSL 3 BASIC12.28□□□□□ -0.442e-20■■□□□ 12.8
DDX55Q8NHQ9 CLPTM1L-202ENST00000503042 3540 ntTSL 212.28□□□□□ -0.449e-8■■□□□ 12.8
DDX55Q8NHQ9 ADSL-221ENST00000637666 1135 ntTSL 512.22□□□□□ -0.452e-6■■□□□ 12.8
DDX55Q8NHQ9 RHBG-203ENST00000494874 324 ntTSL 311.98□□□□□ -0.499e-8■■□□□ 12.8
DDX55Q8NHQ9 IDH3B-204ENST00000466494 677 ntTSL 211.9□□□□□ -0.53e-6■■□□□ 12.8
DDX55Q8NHQ9 UBAP2-203ENST00000379235 2673 ntTSL 1 (best)11.78□□□□□ -0.522e-6■■□□□ 12.8
DDX55Q8NHQ9 CMTR1-201ENST00000373451 4033 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.535e-8■■□□□ 12.8
DDX55Q8NHQ9 CD59-213ENST00000533403 1847 ntTSL 3 BASIC11.72□□□□□ -0.532e-20■■□□□ 12.8
DDX55Q8NHQ9 ZNF217-204ENST00000437222 746 ntTSL 211.65□□□□□ -0.542e-6■■□□□ 12.8
DDX55Q8NHQ9 ABCF1-201ENST00000326195 3481 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.572e-6■■□□□ 12.8
DDX55Q8NHQ9 MDH1-216ENST00000544381 1346 ntTSL 2 BASIC11.39□□□□□ -0.599e-8■■□□□ 12.8
DDX55Q8NHQ9 UBAP2-205ENST00000379239 2513 ntTSL 2 BASIC11.23□□□□□ -0.612e-6■■□□□ 12.8
DDX55Q8NHQ9 CDK2AP1-206ENST00000544658 931 ntTSL 2 BASIC11.22□□□□□ -0.611e-27■■□□□ 12.8
DDX55Q8NHQ9 ABCF1-202ENST00000376545 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.622e-6■■□□□ 12.8
DDX55Q8NHQ9 ABCF1-205ENST00000475993 2860 ntTSL 1 (best)11.16□□□□□ -0.622e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-202ENST00000395850 1889 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.642e-20■■□□□ 12.8
DDX55Q8NHQ9 ADSL-208ENST00000623063 4359 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.652e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-209ENST00000527926 633 ntTSL 310.98□□□□□ -0.652e-20■■□□□ 12.8
DDX55Q8NHQ9 MDH1-215ENST00000539945 1443 ntTSL 2 BASIC10.91□□□□□ -0.669e-8■■□□□ 12.8
DDX55Q8NHQ9 PYGB-201ENST00000216962 4134 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.79e-8■■□□□ 12.8
DDX55Q8NHQ9 MDH1-201ENST00000233114 1650 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.749e-8■■□□□ 12.8
DDX55Q8NHQ9 MYD88-210ENST00000484513 3314 ntTSL 210.44□□□□□ -0.742e-6■■□□□ 12.8
DDX55Q8NHQ9 TGIF2-208ENST00000611732 3344 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.762e-6■■□□□ 12.8
DDX55Q8NHQ9 MICU1-204ENST00000418483 1212 ntTSL 2 BASIC10.27□□□□□ -0.774e-9■■□□□ 12.8
DDX55Q8NHQ9 CD59-203ENST00000415002 1878 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.792e-20■■□□□ 12.8
DDX55Q8NHQ9 PSME2-205ENST00000559005 496 ntTSL 210.04□□□□□ -0.84e-9■■□□□ 12.8
DDX55Q8NHQ9 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC9.73□□□□□ -0.852e-20■■□□□ 12.8
DDX55Q8NHQ9 ADSL-206ENST00000480775 713 ntTSL 1 (best)9.29□□□□□ -0.922e-6■■□□□ 12.8
DDX55Q8NHQ9 UBAP2-212ENST00000629575 3460 ntTSL 28.77□□□□□ -1.012e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-216ENST00000625194 1079 ntTSL 58.75□□□□□ -1.012e-6■■□□□ 12.8
DDX55Q8NHQ9 KPNA6-204ENST00000471599 3941 ntTSL 28.62□□□□□ -1.035e-15■■□□□ 12.8
DDX55Q8NHQ9 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.062e-6■■□□□ 12.8
DDX55Q8NHQ9 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.085e-15■■□□□ 12.8
DDX55Q8NHQ9 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.12e-6■■□□□ 12.8
DDX55Q8NHQ9 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.122e-6■■□□□ 12.8
DDX55Q8NHQ9 ADSL-212ENST00000623978 712 ntTSL 57.99□□□□□ -1.132e-6■■□□□ 12.8
DDX55Q8NHQ9 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC7.92□□□□□ -1.142e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-211ENST00000528987 3716 ntTSL 1 (best)5.59□□□□□ -1.512e-20■■□□□ 12.8
DDX55Q8NHQ9 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.58□□□□□ -1.522e-6■■□□□ 12.8
DDX55Q8NHQ9 DCUN1D4-204ENST00000477560 4840 ntTSL 25.54□□□□□ -1.522e-6■■□□□ 12.8
DDX55Q8NHQ9 MDH1-214ENST00000495083 552 ntTSL 25.52□□□□□ -1.539e-8■■□□□ 12.8
DDX55Q8NHQ9 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.532e-6■■□□□ 12.8
DDX55Q8NHQ9 CD59-212ENST00000533181 424 ntTSL 55.07□□□□□ -1.62e-20■■□□□ 12.8
DDX55Q8NHQ9 UGP2-211ENST00000475550 4397 ntTSL 1 (best)4.88□□□□□ -1.632e-6■■□□□ 12.8
DDX55Q8NHQ9 VSNL1-201ENST00000295156 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.674e-9■■□□□ 12.8
DDX55Q8NHQ9 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.484e-9■■□□□ 12.8
DDX55Q8NHQ9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.851e-8■■□□□ 12.7
DDX55Q8NHQ9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.251e-8■■□□□ 12.7
DDX55Q8NHQ9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.814e-23■■□□□ 12.7
DDX55Q8NHQ9 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.624e-23■■□□□ 12.7
DDX55Q8NHQ9 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.424e-23■■□□□ 12.7
DDX55Q8NHQ9 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.264e-23■■□□□ 12.7
DDX55Q8NHQ9 RNF167-216ENST00000576965 599 ntTSL 516.28■□□□□ 0.24e-23■■□□□ 12.7
DDX55Q8NHQ9 RNF167-206ENST00000572382 989 ntTSL 216.13■□□□□ 0.174e-23■■□□□ 12.7
DDX55Q8NHQ9 RNF167-207ENST00000572430 1511 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.084e-23■■□□□ 12.7
DDX55Q8NHQ9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.484e-31■■□□□ 12.7
DDX55Q8NHQ9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.453e-7■■□□□ 12.7
Retrieved 100 of 15,504 protein–RNA pairs in 156.9 ms