RNA–Protein interactions for RNA: ENST00000544381.3

MDH1-216, Transcript of malate dehydrogenase 1, humanhuman

TSL 2 BASIC

Gene MDH1, Length 1,346 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDH1-216ENST00000544381 AEBP2Q6ZN18 517 aaPredicted RBP29.59■■■□□ 2.33
MDH1-216ENST00000544381 CHIC1Q5VXU3 224 aa28.49■■■□□ 2.15
MDH1-216ENST00000544381 SENP3Q9H4L4 574 aaPredicted RBP25.22■■□□□ 1.63
MDH1-216ENST00000544381 PHF23Q9BUL5 403 aaPredicted RBP24.99■■□□□ 1.59
MDH1-216ENST00000544381 FOXD1Q16676 465 aa23.44■■□□□ 1.34
MDH1-216ENST00000544381 NISCHQ9Y2I1 1504 aa23.09■■□□□ 1.29
MDH1-216ENST00000544381 PLPPR3Q6T4P5 718 aa22.96■■□□□ 1.27
MDH1-216ENST00000544381 PPP6R1Q9UPN7 881 aa22.21■■□□□ 1.15
MDH1-216ENST00000544381 ADRA2BP18089 450 aa22.18■■□□□ 1.14
MDH1-216ENST00000544381 PIAS4Q8N2W9 510 aaPredicted RBP22.02■■□□□ 1.12
MDH1-216ENST00000544381 MSH5O43196 834 aa21.81■■□□□ 1.08
MDH1-216ENST00000544381 POTEDQ86YR6 584 aa21.3■■□□□ 1
MDH1-216ENST00000544381 ABCC9O60706 1549 aa21.09■□□□□ 0.97
MDH1-216ENST00000544381 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
MDH1-216ENST00000544381 SCAF1Q9H7N4 1312 aaKnown RBP20.33■□□□□ 0.85
MDH1-216ENST00000544381 MAPK8IP2Q13387 824 aaPredicted RBP20.26■□□□□ 0.83
MDH1-216ENST00000544381 PPP4R3CPQ6ZMV5 832 aa20.17■□□□□ 0.82
MDH1-216ENST00000544381 DNAJC5BQ9UF47 199 aa20.09■□□□□ 0.81
MDH1-216ENST00000544381 DMRT2Q9Y5R5 561 aa20.04■□□□□ 0.8
MDH1-216ENST00000544381 RB1CC1Q8TDY2 1594 aa19.93■□□□□ 0.78
MDH1-216ENST00000544381 NACADO15069 1562 aa19.74■□□□□ 0.75
MDH1-216ENST00000544381 CNKSR2Q8WXI2 1034 aa19.71■□□□□ 0.75
MDH1-216ENST00000544381 UNC13AQ9UPW8 1703 aa19.66■□□□□ 0.74
MDH1-216ENST00000544381 NCBP3Q53F19 620 aaKnown RBP19.55■□□□□ 0.72
MDH1-216ENST00000544381 PABPN1Q86U42 306 aaKnown RBP eCLIP19.53■□□□□ 0.72
MDH1-216ENST00000544381 BICRAQ9NZM4 1560 aa19.51■□□□□ 0.71
MDH1-216ENST00000544381 HOXD11P31277 338 aaPredicted RBP19.46■□□□□ 0.71
MDH1-216ENST00000544381 RNF216Q9NWF9 866 aaPredicted RBP19.43■□□□□ 0.7
MDH1-216ENST00000544381 MYO15BQ96JP2 1530 aa19.41■□□□□ 0.7
MDH1-216ENST00000544381 DCAF8L2P0C7V8 631 aa19.37■□□□□ 0.69
MDH1-216ENST00000544381 DCAF8L1A6NGE4 600 aa19.25■□□□□ 0.67
MDH1-216ENST00000544381 NPM3O75607 178 aaKnown RBP19.22■□□□□ 0.67
MDH1-216ENST00000544381 KCNA4P22459 653 aa19.2■□□□□ 0.66
MDH1-216ENST00000544381 ZCCHC6Q5VYS8 1495 aaKnown RBP19.11■□□□□ 0.65
MDH1-216ENST00000544381 SHROOM4Q9ULL8 1493 aa19.09■□□□□ 0.65
MDH1-216ENST00000544381 CC2D2AQ9P2K1 1620 aa19.08■□□□□ 0.64
MDH1-216ENST00000544381 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
MDH1-216ENST00000544381 CECR2Q9BXF3 1484 aa19.01■□□□□ 0.63
MDH1-216ENST00000544381 SCRIBQ14160 1630 aa18.98■□□□□ 0.63
MDH1-216ENST00000544381 EIF4G1Q04637 1599 aaKnown RBP18.97■□□□□ 0.63
MDH1-216ENST00000544381 RNF39Q9H2S5 420 aa18.63■□□□□ 0.57
MDH1-216ENST00000544381 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.58■□□□□ 0.573e-7■□□□□ 11.3
MDH1-216ENST00000544381 DNAJC5Q9H3Z4 198 aa18.54■□□□□ 0.56
MDH1-216ENST00000544381 CACNB1Q02641 598 aaPredicted RBP18.5■□□□□ 0.55
MDH1-216ENST00000544381 C1QBPQ07021 282 aaKnown RBP18.4■□□□□ 0.54
MDH1-216ENST00000544381 CUX2O14529 1486 aa18.27■□□□□ 0.51
MDH1-216ENST00000544381 SLC4A2P04920 1241 aa18.24■□□□□ 0.51
MDH1-216ENST00000544381 NCAPD3P42695 1498 aa18.23■□□□□ 0.51
MDH1-216ENST00000544381 SLC4A1APQ9BWU0 796 aaKnown RBP18.23■□□□□ 0.51
MDH1-216ENST00000544381 U3KPZ7 1027 aaPredicted RBP18.2■□□□□ 0.5
MDH1-216ENST00000544381 ATAD2BQ9ULI0 1458 aa18.16■□□□□ 0.5
MDH1-216ENST00000544381 ERCC6Q03468 1493 aa18.13■□□□□ 0.49
MDH1-216ENST00000544381 HMGXB3Q12766 1538 aa18.1■□□□□ 0.49
MDH1-216ENST00000544381 SMARCA4P51532 1647 aa18.1■□□□□ 0.49
MDH1-216ENST00000544381 NESP48681 1621 aa18.09■□□□□ 0.49
MDH1-216ENST00000544381 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
MDH1-216ENST00000544381 THOC2Q8NI27 1593 aaKnown RBP18.01■□□□□ 0.47
MDH1-216ENST00000544381 PEG3Q9GZU2 1588 aa17.95■□□□□ 0.46
MDH1-216ENST00000544381 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
MDH1-216ENST00000544381 BAZ1BQ9UIG0 1483 aaKnown RBP17.91■□□□□ 0.46
MDH1-216ENST00000544381 KIF21AQ7Z4S6 1674 aa17.88■□□□□ 0.45
MDH1-216ENST00000544381 LAMC3Q9Y6N6 1575 aa17.87■□□□□ 0.45
MDH1-216ENST00000544381 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.86■□□□□ 0.45
MDH1-216ENST00000544381 HNRNPUL2Q1KMD3 747 aaKnown RBP17.86■□□□□ 0.45
MDH1-216ENST00000544381 MROH2BQ7Z745 1585 aa17.83■□□□□ 0.44
MDH1-216ENST00000544381 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
MDH1-216ENST00000544381 CAPN15O75808 1086 aa17.8■□□□□ 0.44
MDH1-216ENST00000544381 FOXD4L1Q9NU39 408 aa17.8■□□□□ 0.44
MDH1-216ENST00000544381 MYCNP04198 464 aaPredicted RBP17.78■□□□□ 0.44
MDH1-216ENST00000544381 APLP2Q06481 763 aa17.78■□□□□ 0.44
MDH1-216ENST00000544381 SUPT5HO00267 1087 aaKnown RBP17.77■□□□□ 0.44
MDH1-216ENST00000544381 SAMD1Q6SPF0 538 aaPredicted RBP17.76■□□□□ 0.43
MDH1-216ENST00000544381 PDS5BQ9NTI5 1447 aa17.68■□□□□ 0.42
MDH1-216ENST00000544381 WDR62O43379 1518 aa17.64■□□□□ 0.41
MDH1-216ENST00000544381 ZBTB22O15209 634 aa17.63■□□□□ 0.41
MDH1-216ENST00000544381 MRC2Q9UBG0 1479 aa17.63■□□□□ 0.41
MDH1-216ENST00000544381 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
MDH1-216ENST00000544381 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
MDH1-216ENST00000544381 WIZO95785 1651 aa17.6■□□□□ 0.41
MDH1-216ENST00000544381 ZNF219Q9P2Y4 722 aaPredicted RBP17.59■□□□□ 0.41
MDH1-216ENST00000544381 DSG3P32926 999 aa17.58■□□□□ 0.4
MDH1-216ENST00000544381 RSF1Q96T23 1441 aaPredicted RBP17.56■□□□□ 0.4
MDH1-216ENST00000544381 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
MDH1-216ENST00000544381 CEP164Q9UPV0 1460 aa17.48■□□□□ 0.39
MDH1-216ENST00000544381 FANCD2Q9BXW9 1451 aa17.45■□□□□ 0.38
MDH1-216ENST00000544381 CFTRP13569 1480 aa17.42■□□□□ 0.38
MDH1-216ENST00000544381 ABCB7O75027 752 aa17.4■□□□□ 0.38
MDH1-216ENST00000544381 URB2Q14146 1524 aaKnown RBP17.39■□□□□ 0.37
MDH1-216ENST00000544381 TOP2AP11388 1531 aaKnown RBP17.32■□□□□ 0.36
MDH1-216ENST00000544381 ATF5Q9Y2D1 282 aaPredicted RBP17.31■□□□□ 0.36
MDH1-216ENST00000544381 PRDM2Q13029 1718 aa17.29■□□□□ 0.36
MDH1-216ENST00000544381 OSCARQ8IYS5 282 aa17.27■□□□□ 0.36
MDH1-216ENST00000544381 RIMBP3CA6NJZ7 1639 aa17.27■□□□□ 0.35
MDH1-216ENST00000544381 RIMBP3BA6NNM3 1639 aa17.27■□□□□ 0.35
MDH1-216ENST00000544381 RIMBP3Q9UFD9 1639 aa17.27■□□□□ 0.35
MDH1-216ENST00000544381 ZNF608Q9ULD9 1512 aaPredicted RBP17.22■□□□□ 0.35
MDH1-216ENST00000544381 ATXN8OSP0DMR3 200 aa17.22■□□□□ 0.35
MDH1-216ENST00000544381 POLA2Q14181 598 aa17.22■□□□□ 0.35
MDH1-216ENST00000544381 EHMT2Q96KQ7 1210 aa17.2■□□□□ 0.34
MDH1-216ENST00000544381 CSRNP3Q8WYN3 585 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms