RNA–Protein interactions for RNA: ENST00000585799.5

SMARCA4-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,842 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-208ENST00000585799 NISCHQ9Y2I1 1504 aa25.08■■□□□ 1.61
SMARCA4-208ENST00000585799 DCAF8L2P0C7V8 631 aa22.73■■□□□ 1.23
SMARCA4-208ENST00000585799 SHROOM4Q9ULL8 1493 aa22.35■■□□□ 1.17
SMARCA4-208ENST00000585799 SUPT5HO00267 1087 aaKnown RBP21.98■■□□□ 1.11
SMARCA4-208ENST00000585799 ZCCHC6Q5VYS8 1495 aaKnown RBP20.98■□□□□ 0.95
SMARCA4-208ENST00000585799 CCDC180Q9P1Z9 1646 aa20.97■□□□□ 0.95
SMARCA4-208ENST00000585799 ABCC9O60706 1549 aa20.9■□□□□ 0.94
SMARCA4-208ENST00000585799 EHMT2Q96KQ7 1210 aa20.7■□□□□ 0.9
SMARCA4-208ENST00000585799 CHIC1Q5VXU3 224 aa20.53■□□□□ 0.88
SMARCA4-208ENST00000585799 FAM9AQ8IZU1 332 aaPredicted RBP20.52■□□□□ 0.88
SMARCA4-208ENST00000585799 SCRIBQ14160 1630 aa20.37■□□□□ 0.85
SMARCA4-208ENST00000585799 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
SMARCA4-208ENST00000585799 PABPN1Q86U42 306 aaKnown RBP eCLIP20.3■□□□□ 0.84
SMARCA4-208ENST00000585799 LOC105371045A0A1W2PR82 267 aa20.25■□□□□ 0.83
SMARCA4-208ENST00000585799 DCAF1Q9Y4B6 1507 aa20.12■□□□□ 0.81
SMARCA4-208ENST00000585799 PCGF6Q9BYE7 350 aa20.11■□□□□ 0.81
SMARCA4-208ENST00000585799 RSF1Q96T23 1441 aaPredicted RBP19.91■□□□□ 0.78
SMARCA4-208ENST00000585799 TTBK1Q5TCY1 1321 aaPredicted RBP19.88■□□□□ 0.77
SMARCA4-208ENST00000585799 MYO15BQ96JP2 1530 aa19.88■□□□□ 0.77
SMARCA4-208ENST00000585799 NACADO15069 1562 aa19.85■□□□□ 0.77
SMARCA4-208ENST00000585799 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
SMARCA4-208ENST00000585799 PPARGC1BQ86YN6 1023 aaKnown RBP19.81■□□□□ 0.76
SMARCA4-208ENST00000585799 RB1CC1Q8TDY2 1594 aa19.77■□□□□ 0.76
SMARCA4-208ENST00000585799 RANGAP1P46060 587 aaPredicted RBP19.75■□□□□ 0.75
SMARCA4-208ENST00000585799 UBTFP17480 764 aaKnown RBP19.64■□□□□ 0.74
SMARCA4-208ENST00000585799 MROH2BQ7Z745 1585 aa19.59■□□□□ 0.73
SMARCA4-208ENST00000585799 TRIM26Q12899 539 aaPredicted RBP19.45■□□□□ 0.7
SMARCA4-208ENST00000585799 WIZO95785 1651 aa19.38■□□□□ 0.69
SMARCA4-208ENST00000585799 HRCP23327 699 aa19.38■□□□□ 0.69
SMARCA4-208ENST00000585799 BAZ1AQ9NRL2 1556 aaPredicted RBP19.35■□□□□ 0.69
SMARCA4-208ENST00000585799 APLP2Q06481 763 aa19.33■□□□□ 0.68
SMARCA4-208ENST00000585799 CSRNP3Q8WYN3 585 aa19.2■□□□□ 0.66
SMARCA4-208ENST00000585799 CCDC88BA6NC98 1476 aa19.17■□□□□ 0.66
SMARCA4-208ENST00000585799 CCER1Q8TC90 406 aaPredicted RBP19.16■□□□□ 0.66
SMARCA4-208ENST00000585799 ATP1B4Q9UN42 357 aaPredicted RBP19.12■□□□□ 0.65
SMARCA4-208ENST00000585799 ABCC8Q09428 1581 aa19.1■□□□□ 0.65
SMARCA4-208ENST00000585799 BAZ1BQ9UIG0 1483 aaKnown RBP19.08■□□□□ 0.65
SMARCA4-208ENST00000585799 SMARCA4P51532 1647 aa19.07■□□□□ 0.64
SMARCA4-208ENST00000585799 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.05■□□□□ 0.64
SMARCA4-208ENST00000585799 HNRNPUL2Q1KMD3 747 aaKnown RBP19■□□□□ 0.63
SMARCA4-208ENST00000585799 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
SMARCA4-208ENST00000585799 SOGA1O94964 1423 aa18.99■□□□□ 0.63
SMARCA4-208ENST00000585799 WRNQ14191 1432 aaPredicted RBP eCLIP18.97■□□□□ 0.63
SMARCA4-208ENST00000585799 ZEB1P37275 1124 aaPredicted RBP18.95■□□□□ 0.62
SMARCA4-208ENST00000585799 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
SMARCA4-208ENST00000585799 ITGAEP38570 1179 aa18.88■□□□□ 0.61
SMARCA4-208ENST00000585799 BICRAQ9NZM4 1560 aa18.85■□□□□ 0.61
SMARCA4-208ENST00000585799 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
SMARCA4-208ENST00000585799 RUSC2Q8N2Y8 1516 aa18.81■□□□□ 0.6
SMARCA4-208ENST00000585799 P3H3Q8IVL6 736 aa18.79■□□□□ 0.6
SMARCA4-208ENST00000585799 UNC13AQ9UPW8 1703 aa18.79■□□□□ 0.6
SMARCA4-208ENST00000585799 CEP162Q5TB80 1403 aa18.78■□□□□ 0.6
SMARCA4-208ENST00000585799 TNIKQ9UKE5 1360 aa18.67■□□□□ 0.58
SMARCA4-208ENST00000585799 GOLGA3Q08378 1498 aa18.67■□□□□ 0.58
SMARCA4-208ENST00000585799 EEA1Q15075 1411 aa18.66■□□□□ 0.58
SMARCA4-208ENST00000585799 CLIP1P30622 1438 aa18.65■□□□□ 0.58
SMARCA4-208ENST00000585799 EIF4G1Q04637 1599 aaKnown RBP18.57■□□□□ 0.56
SMARCA4-208ENST00000585799 CEP164Q9UPV0 1460 aa18.56■□□□□ 0.56
SMARCA4-208ENST00000585799 ARID3CA6NKF2 412 aa18.51■□□□□ 0.55
SMARCA4-208ENST00000585799 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
SMARCA4-208ENST00000585799 KIF27Q86VH2 1401 aa18.5■□□□□ 0.55
SMARCA4-208ENST00000585799 NCAPD3P42695 1498 aa18.48■□□□□ 0.55
SMARCA4-208ENST00000585799 DNAJC5BQ9UF47 199 aa18.48■□□□□ 0.55
SMARCA4-208ENST00000585799 RAPGEF2Q9Y4G8 1499 aa18.46■□□□□ 0.55
SMARCA4-208ENST00000585799 CUX2O14529 1486 aa18.45■□□□□ 0.54
SMARCA4-208ENST00000585799 CADPSQ9ULU8 1353 aa18.45■□□□□ 0.54
SMARCA4-208ENST00000585799 SYNJ1O43426 1573 aa18.44■□□□□ 0.54
SMARCA4-208ENST00000585799 FBLN2P98095 1184 aa18.44■□□□□ 0.54
SMARCA4-208ENST00000585799 YTHDC1Q96MU7 727 aaKnown RBP18.39■□□□□ 0.53
SMARCA4-208ENST00000585799 CARMIL1Q5VZK9 1371 aa18.33■□□□□ 0.52
SMARCA4-208ENST00000585799 DIEXFQ68CQ4 756 aaKnown RBP18.33■□□□□ 0.52
SMARCA4-208ENST00000585799 KANK4Q5T7N3 995 aaPredicted RBP18.32■□□□□ 0.52
SMARCA4-208ENST00000585799 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
SMARCA4-208ENST00000585799 TDRD9Q8NDG6 1382 aaKnown RBP18.28■□□□□ 0.52
SMARCA4-208ENST00000585799 VPS8Q8N3P4 1428 aa18.28■□□□□ 0.52
SMARCA4-208ENST00000585799 NEUROD1Q13562 356 aa18.26■□□□□ 0.51
SMARCA4-208ENST00000585799 CFTRP13569 1480 aa18.25■□□□□ 0.51
SMARCA4-208ENST00000585799 NESP48681 1621 aa18.25■□□□□ 0.51
SMARCA4-208ENST00000585799 CC2D2AQ9P2K1 1620 aa18.24■□□□□ 0.51
SMARCA4-208ENST00000585799 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
SMARCA4-208ENST00000585799 HMGXB3Q12766 1538 aa18.23■□□□□ 0.51
SMARCA4-208ENST00000585799 CUX1P39880 1505 aa18.2■□□□□ 0.5
SMARCA4-208ENST00000585799 RAD54L2Q9Y4B4 1467 aa18.18■□□□□ 0.5
SMARCA4-208ENST00000585799 FGD5Q6ZNL6 1462 aa18.18■□□□□ 0.5
SMARCA4-208ENST00000585799 IGF1RP08069 1367 aa18.17■□□□□ 0.5
SMARCA4-208ENST00000585799 ZNF316A6NFI3 1004 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-208ENST00000585799 TOP2BQ02880 1626 aa18.13■□□□□ 0.49
SMARCA4-208ENST00000585799 CENPBP07199 599 aaPredicted RBP18.13■□□□□ 0.49
SMARCA4-208ENST00000585799 PDS5BQ9NTI5 1447 aa18.1■□□□□ 0.49
SMARCA4-208ENST00000585799 TRIM52Q96A61 297 aa18.09■□□□□ 0.49
SMARCA4-208ENST00000585799 CHIC2Q9UKJ5 165 aa18.08■□□□□ 0.48
SMARCA4-208ENST00000585799 MTUS2Q5JR59 1369 aa18.06■□□□□ 0.48
SMARCA4-208ENST00000585799 CHMP7Q8WUX9 453 aaPredicted RBP18.06■□□□□ 0.48
SMARCA4-208ENST00000585799 KIF21BO75037 1637 aa18.04■□□□□ 0.48
SMARCA4-208ENST00000585799 FHOD3Q2V2M9 1422 aa18.03■□□□□ 0.48
SMARCA4-208ENST00000585799 PRXQ9BXM0 1461 aa18.03■□□□□ 0.48
SMARCA4-208ENST00000585799 ZNF777Q9ULD5 760 aaPredicted RBP18.01■□□□□ 0.47
SMARCA4-208ENST00000585799 ERCC6Q03468 1493 aa18.01■□□□□ 0.47
SMARCA4-208ENST00000585799 ARAP1Q96P48 1450 aa17.99■□□□□ 0.47
SMARCA4-208ENST00000585799 CCNB3Q8WWL7 1395 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms