Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
PKNOX1P55347 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PKNOX1P55347 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
PKNOX1P55347 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.3■□□□□ 0.68
PKNOX1P55347 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PKNOX1P55347 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PKNOX1P55347 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.3■□□□□ 0.68
PKNOX1P55347 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 AC007322.1-201ENST00000426983 750 ntBASIC19.3■□□□□ 0.68
PKNOX1P55347 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.3■□□□□ 0.68
PKNOX1P55347 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.3■□□□□ 0.68
PKNOX1P55347 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.3■□□□□ 0.68
PKNOX1P55347 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 OR10C1-204ENST00000622521 1039 ntBASIC19.3■□□□□ 0.68
PKNOX1P55347 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.3■□□□□ 0.68
PKNOX1P55347 AP001271.2-201ENST00000624018 1556 ntBASIC19.3■□□□□ 0.68
PKNOX1P55347 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PKNOX1P55347 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PKNOX1P55347 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.29■□□□□ 0.68
PKNOX1P55347 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.29■□□□□ 0.68
PKNOX1P55347 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
PKNOX1P55347 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.29■□□□□ 0.68
PKNOX1P55347 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.29■□□□□ 0.68
PKNOX1P55347 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.29■□□□□ 0.68
PKNOX1P55347 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 RARRES2P6-201ENST00000567333 442 ntBASIC19.29■□□□□ 0.68
PKNOX1P55347 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.29■□□□□ 0.68
PKNOX1P55347 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.29■□□□□ 0.68
PKNOX1P55347 AL589743.5-201ENST00000616611 1050 ntBASIC19.29■□□□□ 0.68
PKNOX1P55347 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PKNOX1P55347 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.29■□□□□ 0.68
PKNOX1P55347 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PKNOX1P55347 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.28■□□□□ 0.68
PKNOX1P55347 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PKNOX1P55347 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.28■□□□□ 0.68
PKNOX1P55347 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PKNOX1P55347 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.28■□□□□ 0.68
PKNOX1P55347 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.28■□□□□ 0.68
PKNOX1P55347 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.28■□□□□ 0.68
PKNOX1P55347 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.28■□□□□ 0.68
PKNOX1P55347 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.28■□□□□ 0.68
PKNOX1P55347 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PKNOX1P55347 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PKNOX1P55347 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PKNOX1P55347 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.27■□□□□ 0.68
PKNOX1P55347 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PKNOX1P55347 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms