Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLK3P49761 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.64■□□□□ 0.57
CLK3P49761 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.64■□□□□ 0.57
CLK3P49761 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLK3P49761 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.64■□□□□ 0.57
CLK3P49761 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLK3P49761 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLK3P49761 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.64■□□□□ 0.57
CLK3P49761 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.64■□□□□ 0.57
CLK3P49761 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLK3P49761 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLK3P49761 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLK3P49761 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 AC005332.7-201ENST00000614046 2005 ntBASIC18.63■□□□□ 0.57
CLK3P49761 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLK3P49761 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.63■□□□□ 0.57
CLK3P49761 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.63■□□□□ 0.57
CLK3P49761 TSPY6P-201ENST00000448518 926 ntBASIC18.63■□□□□ 0.57
CLK3P49761 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.63■□□□□ 0.57
CLK3P49761 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.63■□□□□ 0.57
CLK3P49761 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.63■□□□□ 0.57
CLK3P49761 MIR4758-201ENST00000577688 71 ntBASIC18.63■□□□□ 0.57
CLK3P49761 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.63■□□□□ 0.57
CLK3P49761 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 LETM1P2-201ENST00000597330 2178 ntBASIC18.63■□□□□ 0.57
CLK3P49761 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLK3P49761 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.63■□□□□ 0.57
CLK3P49761 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CLK3P49761 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.63■□□□□ 0.57
CLK3P49761 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLK3P49761 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CLK3P49761 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 MIPEPP3-201ENST00000412105 444 ntBASIC18.62■□□□□ 0.57
CLK3P49761 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.62■□□□□ 0.57
CLK3P49761 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.62■□□□□ 0.57
CLK3P49761 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLK3P49761 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.61■□□□□ 0.57
CLK3P49761 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.61■□□□□ 0.57
CLK3P49761 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.61■□□□□ 0.57
CLK3P49761 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.61■□□□□ 0.57
CLK3P49761 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
CLK3P49761 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.61■□□□□ 0.57
CLK3P49761 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CLK3P49761 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLK3P49761 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.6■□□□□ 0.57
CLK3P49761 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CLK3P49761 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.6■□□□□ 0.57
CLK3P49761 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.6■□□□□ 0.57
CLK3P49761 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLK3P49761 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.6■□□□□ 0.57
CLK3P49761 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CLK3P49761 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms