Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HNF4AP41235 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HNF4AP41235 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.09■□□□□ 0.65
HNF4AP41235 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 RNA5SP413-201ENST00000516373 109 ntBASIC19.09■□□□□ 0.65
HNF4AP41235 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.09■□□□□ 0.65
HNF4AP41235 AC005829.2-201ENST00000571422 1056 ntBASIC19.09■□□□□ 0.65
HNF4AP41235 AC006557.6-201ENST00000623071 864 ntBASIC19.09■□□□□ 0.65
HNF4AP41235 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HNF4AP41235 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.09■□□□□ 0.65
HNF4AP41235 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HNF4AP41235 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HNF4AP41235 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HNF4AP41235 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.08■□□□□ 0.65
HNF4AP41235 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
HNF4AP41235 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.08■□□□□ 0.65
HNF4AP41235 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HNF4AP41235 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.08■□□□□ 0.64
HNF4AP41235 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.08■□□□□ 0.64
HNF4AP41235 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.08■□□□□ 0.64
HNF4AP41235 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.08■□□□□ 0.64
HNF4AP41235 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HNF4AP41235 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HNF4AP41235 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.07■□□□□ 0.64
HNF4AP41235 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.07■□□□□ 0.64
HNF4AP41235 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
HNF4AP41235 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.07■□□□□ 0.64
HNF4AP41235 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.07■□□□□ 0.64
HNF4AP41235 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.07■□□□□ 0.64
HNF4AP41235 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
HNF4AP41235 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HNF4AP41235 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HNF4AP41235 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HNF4AP41235 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HNF4AP41235 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
HNF4AP41235 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HNF4AP41235 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.06■□□□□ 0.64
HNF4AP41235 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HNF4AP41235 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.06■□□□□ 0.64
HNF4AP41235 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.06■□□□□ 0.64
HNF4AP41235 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.06■□□□□ 0.64
HNF4AP41235 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.06■□□□□ 0.64
HNF4AP41235 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.06■□□□□ 0.64
HNF4AP41235 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.06■□□□□ 0.64
HNF4AP41235 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.06■□□□□ 0.64
HNF4AP41235 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HNF4AP41235 HLA-B-256ENST00000639848 1089 ntBASIC19.06■□□□□ 0.64
HNF4AP41235 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms