Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL2A1P02458 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
COL2A1P02458 AC020907.5-201ENST00000624372 1936 ntBASIC23.15■■□□□ 1.3
COL2A1P02458 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC23.15■■□□□ 1.3
COL2A1P02458 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.15■■□□□ 1.3
COL2A1P02458 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL2A1P02458 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL2A1P02458 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC23.15■■□□□ 1.3
COL2A1P02458 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL2A1P02458 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL2A1P02458 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL2A1P02458 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL2A1P02458 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.3
COL2A1P02458 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL2A1P02458 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL2A1P02458 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL2A1P02458 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
COL2A1P02458 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL2A1P02458 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL2A1P02458 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL2A1P02458 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC23.14■■□□□ 1.29
COL2A1P02458 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC23.14■■□□□ 1.29
COL2A1P02458 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.14■■□□□ 1.29
COL2A1P02458 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC23.14■■□□□ 1.29
COL2A1P02458 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL2A1P02458 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL2A1P02458 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.13■■□□□ 1.29
COL2A1P02458 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.13■■□□□ 1.29
COL2A1P02458 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.13■■□□□ 1.29
COL2A1P02458 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC23.13■■□□□ 1.29
COL2A1P02458 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC23.13■■□□□ 1.29
COL2A1P02458 KRT18P35-201ENST00000510488 1269 ntBASIC23.13■■□□□ 1.29
COL2A1P02458 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC23.13■■□□□ 1.29
COL2A1P02458 AC130371.2-201ENST00000619443 611 ntBASIC23.13■■□□□ 1.29
COL2A1P02458 CLN6-221ENST00000637494 765 ntTSL 5 BASIC23.13■■□□□ 1.29
COL2A1P02458 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
COL2A1P02458 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC23.13■■□□□ 1.29
COL2A1P02458 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL2A1P02458 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC23.12■■□□□ 1.29
COL2A1P02458 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC23.12■■□□□ 1.29
COL2A1P02458 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC23.12■■□□□ 1.29
COL2A1P02458 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.12■■□□□ 1.29
COL2A1P02458 FAM87A-204ENST00000613235 858 ntBASIC23.12■■□□□ 1.29
COL2A1P02458 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
COL2A1P02458 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
COL2A1P02458 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
COL2A1P02458 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL2A1P02458 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.11■■□□□ 1.29
COL2A1P02458 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC23.11■■□□□ 1.29
COL2A1P02458 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC23.11■■□□□ 1.29
COL2A1P02458 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.11■■□□□ 1.29
COL2A1P02458 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.11■■□□□ 1.29
COL2A1P02458 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 CRYGFP-201ENST00000418459 633 ntBASIC23.11■■□□□ 1.29
COL2A1P02458 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC23.11■■□□□ 1.29
COL2A1P02458 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC23.11■■□□□ 1.29
COL2A1P02458 AL137013.1-201ENST00000432946 1228 ntBASIC23.11■■□□□ 1.29
COL2A1P02458 FAM207BP-201ENST00000447172 505 ntBASIC23.11■■□□□ 1.29
COL2A1P02458 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL2A1P02458 AC008040.2-201ENST00000461049 708 ntBASIC23.11■■□□□ 1.29
COL2A1P02458 LTBR-211ENST00000543190 785 ntTSL 3 BASIC23.11■■□□□ 1.29
COL2A1P02458 AC010203.1-204ENST00000548782 407 ntBASIC23.11■■□□□ 1.29
COL2A1P02458 NME3-204ENST00000563498 920 ntTSL 2 BASIC23.11■■□□□ 1.29
COL2A1P02458 AL049597.2-201ENST00000565575 961 ntBASIC23.11■■□□□ 1.29
COL2A1P02458 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL2A1P02458 FEM1AP1-201ENST00000431297 1995 ntBASIC23.1■■□□□ 1.29
COL2A1P02458 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.1■■□□□ 1.29
COL2A1P02458 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL2A1P02458 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL2A1P02458 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
COL2A1P02458 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL2A1P02458 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC23.1■■□□□ 1.29
COL2A1P02458 MFAP1P1-201ENST00000442257 1255 ntBASIC23.1■■□□□ 1.29
COL2A1P02458 FDX2-206ENST00000492239 773 ntTSL 2 BASIC23.1■■□□□ 1.29
COL2A1P02458 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL2A1P02458 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms