Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 AC083906.2-201ENST00000511578 360 ntBASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 AP001271.2-201ENST00000624018 1556 ntBASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 PHGDH-210ENST00000641115 1638 ntBASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 MIPEPP3-201ENST00000412105 444 ntBASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC40Q4G0X9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 TREX1-205ENST00000625293 1783 ntBASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC40Q4G0X9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 AC116562.4-201ENST00000641316 2276 ntBASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CCDC40Q4G0X9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC40Q4G0X9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms