Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC22.9■■□□□ 1.26
HMGCS2P54868 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HMGCS2P54868 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HMGCS2P54868 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
HMGCS2P54868 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HMGCS2P54868 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.89■■□□□ 1.26
HMGCS2P54868 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.26
HMGCS2P54868 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.26
HMGCS2P54868 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HMGCS2P54868 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
HMGCS2P54868 INGX-201ENST00000359239 846 ntBASIC22.89■■□□□ 1.25
HMGCS2P54868 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HMGCS2P54868 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HMGCS2P54868 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.89■■□□□ 1.25
HMGCS2P54868 LIN28AP1-201ENST00000429574 405 ntBASIC22.89■■□□□ 1.25
HMGCS2P54868 AC006011.2-201ENST00000621313 1158 ntBASIC22.89■■□□□ 1.25
HMGCS2P54868 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HMGCS2P54868 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HMGCS2P54868 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGCS2P54868 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGCS2P54868 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGCS2P54868 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGCS2P54868 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGCS2P54868 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.88■■□□□ 1.25
HMGCS2P54868 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
HMGCS2P54868 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
HMGCS2P54868 ATP5G1P1-201ENST00000448724 379 ntBASIC22.88■■□□□ 1.25
HMGCS2P54868 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC22.88■■□□□ 1.25
HMGCS2P54868 WWOX-216ENST00000569818 525 ntBASIC22.88■■□□□ 1.25
HMGCS2P54868 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
HMGCS2P54868 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
HMGCS2P54868 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.87■■□□□ 1.25
HMGCS2P54868 AC079834.2-201ENST00000609776 1949 ntBASIC22.87■■□□□ 1.25
HMGCS2P54868 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HMGCS2P54868 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.87■■□□□ 1.25
HMGCS2P54868 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGCS2P54868 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC22.87■■□□□ 1.25
HMGCS2P54868 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.87■■□□□ 1.25
HMGCS2P54868 SLC25A1P4-201ENST00000567977 778 ntBASIC22.87■■□□□ 1.25
HMGCS2P54868 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGCS2P54868 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HMGCS2P54868 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HMGCS2P54868 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 LGALS8-AS1-201ENST00000487567 1457 ntBASIC22.86■■□□□ 1.25
HMGCS2P54868 SMG8-203ENST00000578922 2178 ntBASIC22.86■■□□□ 1.25
HMGCS2P54868 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 RCC2P6-201ENST00000526625 1557 ntBASIC22.86■■□□□ 1.25
HMGCS2P54868 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
HMGCS2P54868 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC22.86■■□□□ 1.25
HMGCS2P54868 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGCS2P54868 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC22.86■■□□□ 1.25
HMGCS2P54868 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC22.86■■□□□ 1.25
HMGCS2P54868 FAM87A-204ENST00000613235 858 ntBASIC22.86■■□□□ 1.25
HMGCS2P54868 AC130371.2-201ENST00000619443 611 ntBASIC22.86■■□□□ 1.25
HMGCS2P54868 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
HMGCS2P54868 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HMGCS2P54868 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
HMGCS2P54868 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.85■■□□□ 1.25
HMGCS2P54868 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.85■■□□□ 1.25
HMGCS2P54868 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
HMGCS2P54868 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGCS2P54868 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
HMGCS2P54868 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
HMGCS2P54868 AC008040.2-201ENST00000461049 708 ntBASIC22.85■■□□□ 1.25
HMGCS2P54868 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC22.85■■□□□ 1.25
HMGCS2P54868 AC087388.1-201ENST00000571370 1112 ntBASIC22.85■■□□□ 1.25
HMGCS2P54868 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 HLA-A-209ENST00000638375 975 ntBASIC22.85■■□□□ 1.25
HMGCS2P54868 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.85■■□□□ 1.25
HMGCS2P54868 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
HMGCS2P54868 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGCS2P54868 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
HMGCS2P54868 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGCS2P54868 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGCS2P54868 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.84■■□□□ 1.25
HMGCS2P54868 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGCS2P54868 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
HMGCS2P54868 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms