Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.79■□□□□ 0.76
PTPN4P29074 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN4P29074 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN4P29074 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.79■□□□□ 0.76
PTPN4P29074 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
PTPN4P29074 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTPN4P29074 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.78■□□□□ 0.76
PTPN4P29074 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN4P29074 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
PTPN4P29074 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PTPN4P29074 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN4P29074 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
PTPN4P29074 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
PTPN4P29074 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.78■□□□□ 0.76
PTPN4P29074 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN4P29074 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.78■□□□□ 0.76
PTPN4P29074 AC016405.3-201ENST00000607710 860 ntBASIC19.78■□□□□ 0.76
PTPN4P29074 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN4P29074 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.78■□□□□ 0.76
PTPN4P29074 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTPN4P29074 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.78■□□□□ 0.76
PTPN4P29074 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.77■□□□□ 0.76
PTPN4P29074 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
PTPN4P29074 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.77■□□□□ 0.76
PTPN4P29074 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN4P29074 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN4P29074 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PTPN4P29074 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN4P29074 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.77■□□□□ 0.76
PTPN4P29074 AC093787.1-201ENST00000450396 207 ntBASIC19.77■□□□□ 0.76
PTPN4P29074 FAM201B-201ENST00000458407 597 ntBASIC19.77■□□□□ 0.76
PTPN4P29074 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.77■□□□□ 0.76
PTPN4P29074 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.77■□□□□ 0.76
PTPN4P29074 MIR4651-201ENST00000582622 73 ntBASIC19.77■□□□□ 0.76
PTPN4P29074 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PTPN4P29074 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.77■□□□□ 0.76
PTPN4P29074 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PTPN4P29074 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
PTPN4P29074 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTPN4P29074 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.77■□□□□ 0.76
PTPN4P29074 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
PTPN4P29074 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
PTPN4P29074 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
PTPN4P29074 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.77■□□□□ 0.75
PTPN4P29074 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.76■□□□□ 0.75
PTPN4P29074 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.76■□□□□ 0.75
PTPN4P29074 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PTPN4P29074 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PTPN4P29074 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.76■□□□□ 0.75
PTPN4P29074 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.76■□□□□ 0.75
PTPN4P29074 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.76■□□□□ 0.75
PTPN4P29074 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
PTPN4P29074 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PTPN4P29074 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.76■□□□□ 0.75
PTPN4P29074 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
PTPN4P29074 RBM17P2-201ENST00000616397 1405 ntBASIC19.76■□□□□ 0.75
PTPN4P29074 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 AC005082.1-201ENST00000413042 2259 ntBASIC19.76■□□□□ 0.75
PTPN4P29074 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTPN4P29074 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.75■□□□□ 0.75
PTPN4P29074 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.75■□□□□ 0.75
PTPN4P29074 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
PTPN4P29074 AL162412.1-201ENST00000567129 965 ntBASIC19.75■□□□□ 0.75
PTPN4P29074 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTPN4P29074 AL591742.1-201ENST00000604433 565 ntBASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms