Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A6A6NMZ7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A6A6NMZ7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 AC004951.3-201ENST00000418645 1148 ntBASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 AL845331.1-201ENST00000424978 1190 ntBASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 AC127496.7-201ENST00000625110 1798 ntBASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL6A6A6NMZ7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 AC140113.3-201ENST00000605663 199 ntBASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A6A6NMZ7 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 ZNF444P1-201ENST00000559497 298 ntBASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 KRT8P36-201ENST00000489121 1440 ntBASIC17.85■□□□□ 0.45
COL6A6A6NMZ7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 KRT18P38-201ENST00000449496 1282 ntBASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 STARP1-201ENST00000397973 869 ntBASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A6A6NMZ7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A6A6NMZ7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms