Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZNF471-201ENST00000308031 6287 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 CARD8-203ENST00000447740 5210 ntAPPRIS P3 TSL 2 BASIC4.17□□□□□ -1.74
PRKDCP78527 ZNF557-202ENST00000414706 5736 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
PRKDCP78527 MYO7B-203ENST00000428314 6715 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 SCN5A-204ENST00000414099 8303 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 SALL4-201ENST00000217086 5208 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 NCAM1-225ENST00000618266 5937 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 BDP1-201ENST00000358731 11073 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 RMST-210ENST00000640149 2844 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 SNORA17.1-201ENST00000362945 126 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 MIR134-201ENST00000385258 73 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AC007064.3-201ENST00000422608 359 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.17□□□□□ -1.74
PRKDCP78527 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC4.17□□□□□ -1.74
PRKDCP78527 SDC4P-201ENST00000453285 601 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC4.17□□□□□ -1.74
PRKDCP78527 SCARNA6.1-201ENST00000516989 238 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC4.17□□□□□ -1.74
PRKDCP78527 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 ABCC12-201ENST00000311303 5168 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 MTMR3-202ENST00000333027 8906 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
PRKDCP78527 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
PRKDCP78527 NRIR-201ENST00000366140 799 ntTSL 3 BASIC4.17□□□□□ -1.74
PRKDCP78527 RMRPP5-201ENST00000411156 267 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AL713922.1-201ENST00000416477 747 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AC090638.1-201ENST00000498296 909 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 HMGB1P23-201ENST00000518743 568 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.17□□□□□ -1.74
PRKDCP78527 AC034105.4-201ENST00000568304 277 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 MIR4675-201ENST00000577898 77 ntBASIC4.17□□□□□ -1.74
PRKDCP78527 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.17□□□□□ -1.74
PRKDCP78527 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 SPTAN1-201ENST00000358161 7794 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 RFT1-201ENST00000296292 5108 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PRKDCP78527 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.17□□□□□ -1.74
PRKDCP78527 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 UTY-201ENST00000329134 4325 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 NAIP-201ENST00000194097 6088 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
PRKDCP78527 NEPRO-202ENST00000383675 4672 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 RPS4XP5-201ENST00000419038 768 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 AC104164.1-201ENST00000460282 590 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.16□□□□□ -1.74
PRKDCP78527 RN7SKP122-201ENST00000515923 296 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 AC008033.2-201ENST00000542626 177 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 ZNF658B-201ENST00000602828 3408 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 SLC26A9-203ENST00000367135 4799 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 EPHA5-205ENST00000613740 8355 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
PRKDCP78527 LRRC2-202ENST00000395905 5100 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 NPM1P40-201ENST00000412758 733 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.16□□□□□ -1.74
PRKDCP78527 RN7SL570P-201ENST00000484405 292 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 MIR92B-201ENST00000607575 96 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC4.16□□□□□ -1.74
PRKDCP78527 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 RTL10-203ENST00000407472 6523 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 SRGAP2B-204ENST00000612199 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 AL353796.1-201ENST00000561542 3241 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 AC011493.1-201ENST00000596753 1632 ntBASIC4.16□□□□□ -1.74
PRKDCP78527 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
PRKDCP78527 ARHGAP19-201ENST00000358308 5390 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms