RNA–Protein interactions for RNA: ENST00000516989.1

SCARNA6.1-201, small Cajal body-specific RNA 6, humanhuman

BASIC

Gene SCARNA6, Length 238 nt, Biotype scaRNA, Subcellular localisation Cytosol, Nucleolus, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA6.1-201ENST00000516989 CHIC1Q5VXU3 224 aa16.57■□□□□ 0.24
SCARNA6.1-201ENST00000516989 AEBP2Q6ZN18 517 aaPredicted RBP16.44■□□□□ 0.22
SCARNA6.1-201ENST00000516989 PHF23Q9BUL5 403 aaPredicted RBP14.66□□□□□ -0.06
SCARNA6.1-201ENST00000516989 SENP3Q9H4L4 574 aaPredicted RBP13.83□□□□□ -0.2
SCARNA6.1-201ENST00000516989 PLPPR3Q6T4P5 718 aa13.7□□□□□ -0.22
SCARNA6.1-201ENST00000516989 NISCHQ9Y2I1 1504 aa13.6□□□□□ -0.23
SCARNA6.1-201ENST00000516989 ADRA2BP18089 450 aa12.86□□□□□ -0.35
SCARNA6.1-201ENST00000516989 FOXD1Q16676 465 aa12.79□□□□□ -0.36
SCARNA6.1-201ENST00000516989 PPP6R1Q9UPN7 881 aa12.77□□□□□ -0.37
SCARNA6.1-201ENST00000516989 KCNA4P22459 653 aa12.51□□□□□ -0.41
SCARNA6.1-201ENST00000516989 EHMT2Q96KQ7 1210 aa12.32□□□□□ -0.44
SCARNA6.1-201ENST00000516989 PIAS4Q8N2W9 510 aaPredicted RBP12.19□□□□□ -0.46
SCARNA6.1-201ENST00000516989 PPP4R3CPQ6ZMV5 832 aa12.17□□□□□ -0.46
SCARNA6.1-201ENST00000516989 SLC4A1APQ9BWU0 796 aaKnown RBP12.02□□□□□ -0.49
SCARNA6.1-201ENST00000516989 NCBP3Q53F19 620 aaKnown RBP11.99□□□□□ -0.49
SCARNA6.1-201ENST00000516989 CCDC180Q9P1Z9 1646 aa11.95□□□□□ -0.5
SCARNA6.1-201ENST00000516989 CSRNP3Q8WYN3 585 aa11.92□□□□□ -0.5
SCARNA6.1-201ENST00000516989 NPM3O75607 178 aaKnown RBP11.83□□□□□ -0.52
SCARNA6.1-201ENST00000516989 ABCC9O60706 1549 aa11.76□□□□□ -0.53
SCARNA6.1-201ENST00000516989 CNKSR2Q8WXI2 1034 aa11.69□□□□□ -0.54
SCARNA6.1-201ENST00000516989 SCAF1Q9H7N4 1312 aaKnown RBP11.67□□□□□ -0.54
SCARNA6.1-201ENST00000516989 DCAF8L2P0C7V8 631 aa11.56□□□□□ -0.56
SCARNA6.1-201ENST00000516989 MSH5O43196 834 aa11.55□□□□□ -0.56
SCARNA6.1-201ENST00000516989 ZBTB22O15209 634 aa11.53□□□□□ -0.56
SCARNA6.1-201ENST00000516989 MAPK8IP2Q13387 824 aaPredicted RBP11.46□□□□□ -0.57
SCARNA6.1-201ENST00000516989 DNAJC5BQ9UF47 199 aa11.35□□□□□ -0.59
SCARNA6.1-201ENST00000516989 FOXD4L1Q9NU39 408 aa11.34□□□□□ -0.59
SCARNA6.1-201ENST00000516989 ZCCHC6Q5VYS8 1495 aaKnown RBP11.32□□□□□ -0.6
SCARNA6.1-201ENST00000516989 RNF216Q9NWF9 866 aaPredicted RBP11.31□□□□□ -0.6
SCARNA6.1-201ENST00000516989 NACADO15069 1562 aa11.28□□□□□ -0.6
SCARNA6.1-201ENST00000516989 RB1CC1Q8TDY2 1594 aa11.27□□□□□ -0.61
SCARNA6.1-201ENST00000516989 MYO15BQ96JP2 1530 aa11.21□□□□□ -0.61
SCARNA6.1-201ENST00000516989 DCAF1Q9Y4B6 1507 aa11.2□□□□□ -0.62
SCARNA6.1-201ENST00000516989 DMRT2Q9Y5R5 561 aa11.14□□□□□ -0.63
SCARNA6.1-201ENST00000516989 HOXD11P31277 338 aaPredicted RBP11.12□□□□□ -0.63
SCARNA6.1-201ENST00000516989 PABPN1Q86U42 306 aaKnown RBP eCLIP11.08□□□□□ -0.64
SCARNA6.1-201ENST00000516989 SLC4A2P04920 1241 aa11.04□□□□□ -0.64
SCARNA6.1-201ENST00000516989 SCRIBQ14160 1630 aa11□□□□□ -0.65
SCARNA6.1-201ENST00000516989 UNC13AQ9UPW8 1703 aa10.94□□□□□ -0.66
SCARNA6.1-201ENST00000516989 SHROOM4Q9ULL8 1493 aa10.93□□□□□ -0.66
SCARNA6.1-201ENST00000516989 BICRAQ9NZM4 1560 aa10.9□□□□□ -0.66
SCARNA6.1-201ENST00000516989 MYCNP04198 464 aaPredicted RBP10.89□□□□□ -0.67
SCARNA6.1-201ENST00000516989 ATXN8OSP0DMR3 200 aa10.89□□□□□ -0.67
SCARNA6.1-201ENST00000516989 RTN4Q9NQC3 1192 aaKnown RBP10.76□□□□□ -0.69
SCARNA6.1-201ENST00000516989 FKBP8Q14318 412 aa10.74□□□□□ -0.69
SCARNA6.1-201ENST00000516989 AMER1Q5JTC6 1135 aaPredicted RBP10.74□□□□□ -0.69
SCARNA6.1-201ENST00000516989 DNAJC5Q9H3Z4 198 aa10.68□□□□□ -0.7
SCARNA6.1-201ENST00000516989 DCAF8L1A6NGE4 600 aa10.66□□□□□ -0.7
SCARNA6.1-201ENST00000516989 EIF4G1Q04637 1599 aaKnown RBP10.64□□□□□ -0.71
SCARNA6.1-201ENST00000516989 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.63□□□□□ -0.71
SCARNA6.1-201ENST00000516989 CECR2Q9BXF3 1484 aa10.62□□□□□ -0.71
SCARNA6.1-201ENST00000516989 SLC24A1O60721 1099 aa10.61□□□□□ -0.71
SCARNA6.1-201ENST00000516989 ATF5Q9Y2D1 282 aaPredicted RBP10.6□□□□□ -0.71
SCARNA6.1-201ENST00000516989 CC2D2AQ9P2K1 1620 aa10.57□□□□□ -0.72
SCARNA6.1-201ENST00000516989 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.54□□□□□ -0.72
SCARNA6.1-201ENST00000516989 HNRNPUL2Q1KMD3 747 aaKnown RBP10.54□□□□□ -0.72
SCARNA6.1-201ENST00000516989 SAMD1Q6SPF0 538 aaPredicted RBP10.54□□□□□ -0.72
SCARNA6.1-201ENST00000516989 BAZ1AQ9NRL2 1556 aaPredicted RBP10.52□□□□□ -0.72
SCARNA6.1-201ENST00000516989 U3KPZ7 1027 aaPredicted RBP10.5□□□□□ -0.73
SCARNA6.1-201ENST00000516989 MROH2BQ7Z745 1585 aa10.5□□□□□ -0.73
SCARNA6.1-201ENST00000516989 SMARCA4P51532 1647 aa10.5□□□□□ -0.73
SCARNA6.1-201ENST00000516989 ATAD2BQ9ULI0 1458 aa10.47□□□□□ -0.73
SCARNA6.1-201ENST00000516989 NCAPD3P42695 1498 aa10.44□□□□□ -0.74
SCARNA6.1-201ENST00000516989 RSF1Q96T23 1441 aaPredicted RBP10.44□□□□□ -0.74
SCARNA6.1-201ENST00000516989 SMARCA2P51531 1590 aa10.43□□□□□ -0.74
SCARNA6.1-201ENST00000516989 SUPT5HO00267 1087 aaKnown RBP10.4□□□□□ -0.74
SCARNA6.1-201ENST00000516989 BAZ1BQ9UIG0 1483 aaKnown RBP10.39□□□□□ -0.75
SCARNA6.1-201ENST00000516989 WIZO95785 1651 aa10.38□□□□□ -0.75
SCARNA6.1-201ENST00000516989 PEG3Q9GZU2 1588 aa10.36□□□□□ -0.75
SCARNA6.1-201ENST00000516989 ZNF219Q9P2Y4 722 aaPredicted RBP10.36□□□□□ -0.75
SCARNA6.1-201ENST00000516989 HMGXB3Q12766 1538 aa10.33□□□□□ -0.76
SCARNA6.1-201ENST00000516989 APLP2Q06481 763 aa10.29□□□□□ -0.76
SCARNA6.1-201ENST00000516989 TOP2AP11388 1531 aaKnown RBP10.25□□□□□ -0.77
SCARNA6.1-201ENST00000516989 SPDYE4A6NLX3 237 aa10.2□□□□□ -0.78
SCARNA6.1-201ENST00000516989 CCDC88BA6NC98 1476 aa10.19□□□□□ -0.78
SCARNA6.1-201ENST00000516989 FBXO3Q9UK99 471 aa10.19□□□□□ -0.78
SCARNA6.1-201ENST00000516989 CADPSQ9ULU8 1353 aa10.18□□□□□ -0.78
SCARNA6.1-201ENST00000516989 NESP48681 1621 aa10.18□□□□□ -0.78
SCARNA6.1-201ENST00000516989 MKRN4PQ13434 485 aaPredicted RBP10.15□□□□□ -0.78
SCARNA6.1-201ENST00000516989 ERCC6Q03468 1493 aa10.13□□□□□ -0.79
SCARNA6.1-201ENST00000516989 LAMC3Q9Y6N6 1575 aa10.11□□□□□ -0.79
SCARNA6.1-201ENST00000516989 PDS5BQ9NTI5 1447 aa10.11□□□□□ -0.79
SCARNA6.1-201ENST00000516989 CFTRP13569 1480 aa10.1□□□□□ -0.79
SCARNA6.1-201ENST00000516989 TRHP20396 242 aaPredicted RBP10.09□□□□□ -0.79
SCARNA6.1-201ENST00000516989 FBLN2P98095 1184 aa10.09□□□□□ -0.79
SCARNA6.1-201ENST00000516989 PROM2Q8N271 834 aa10.08□□□□□ -0.8
SCARNA6.1-201ENST00000516989 SPINK5Q9NQ38 1064 aaPredicted RBP10.06□□□□□ -0.8
SCARNA6.1-201ENST00000516989 POLA2Q14181 598 aa10.05□□□□□ -0.8
SCARNA6.1-201ENST00000516989 VASPP50552 380 aaPredicted RBP10.04□□□□□ -0.8
SCARNA6.1-201ENST00000516989 FANCD2Q9BXW9 1451 aa10.04□□□□□ -0.8
SCARNA6.1-201ENST00000516989 CEP164Q9UPV0 1460 aa10□□□□□ -0.81
SCARNA6.1-201ENST00000516989 CAPN15O75808 1086 aa9.99□□□□□ -0.81
SCARNA6.1-201ENST00000516989 KIF21AQ7Z4S6 1674 aa9.98□□□□□ -0.81
SCARNA6.1-201ENST00000516989 MRC2Q9UBG0 1479 aa9.97□□□□□ -0.81
SCARNA6.1-201ENST00000516989 IFNLR1Q8IU57 520 aaPredicted RBP9.96□□□□□ -0.82
SCARNA6.1-201ENST00000516989 RNF39Q9H2S5 420 aa9.96□□□□□ -0.82
SCARNA6.1-201ENST00000516989 CUX2O14529 1486 aa9.91□□□□□ -0.82
SCARNA6.1-201ENST00000516989 PLCB2Q00722 1185 aa9.91□□□□□ -0.82
SCARNA6.1-201ENST00000516989 THOC2Q8NI27 1593 aaKnown RBP9.91□□□□□ -0.82
SCARNA6.1-201ENST00000516989 URB2Q14146 1524 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms