RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 AEBP2Q6ZN18 517 aaPredicted RBP18.22■□□□□ 0.51
HMGB1P23-201ENST00000518743 CHIC1Q5VXU3 224 aa17.5■□□□□ 0.39
HMGB1P23-201ENST00000518743 SENP3Q9H4L4 574 aaPredicted RBP15.43■□□□□ 0.06
HMGB1P23-201ENST00000518743 PHF23Q9BUL5 403 aaPredicted RBP15.42■□□□□ 0.06
HMGB1P23-201ENST00000518743 FOXD1Q16676 465 aa14.41□□□□□ -0.1
HMGB1P23-201ENST00000518743 PLPPR3Q6T4P5 718 aa14.15□□□□□ -0.14
HMGB1P23-201ENST00000518743 PPP6R1Q9UPN7 881 aa13.71□□□□□ -0.21
HMGB1P23-201ENST00000518743 ADRA2BP18089 450 aa13.7□□□□□ -0.22
HMGB1P23-201ENST00000518743 PIAS4Q8N2W9 510 aaPredicted RBP13.52□□□□□ -0.25
HMGB1P23-201ENST00000518743 MSH5O43196 834 aa13.3□□□□□ -0.28
HMGB1P23-201ENST00000518743 KCNA4P22459 653 aa12.78□□□□□ -0.36
HMGB1P23-201ENST00000518743 EHMT2Q96KQ7 1210 aa12.64□□□□□ -0.39
HMGB1P23-201ENST00000518743 POTEDQ86YR6 584 aa12.6□□□□□ -0.39
HMGB1P23-201ENST00000518743 MAPK8IP2Q13387 824 aaPredicted RBP12.51□□□□□ -0.41
HMGB1P23-201ENST00000518743 NCBP3Q53F19 620 aaKnown RBP12.48□□□□□ -0.41
HMGB1P23-201ENST00000518743 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
HMGB1P23-201ENST00000518743 SCAF1Q9H7N4 1312 aaKnown RBP12.42□□□□□ -0.42
HMGB1P23-201ENST00000518743 SLC4A1APQ9BWU0 796 aaKnown RBP12.39□□□□□ -0.43
HMGB1P23-201ENST00000518743 DMRT2Q9Y5R5 561 aa12.29□□□□□ -0.44
HMGB1P23-201ENST00000518743 CSRNP3Q8WYN3 585 aa12.2□□□□□ -0.46
HMGB1P23-201ENST00000518743 NPM3O75607 178 aaKnown RBP12.1□□□□□ -0.47
HMGB1P23-201ENST00000518743 CNKSR2Q8WXI2 1034 aa12.09□□□□□ -0.47
HMGB1P23-201ENST00000518743 HOXD11P31277 338 aaPredicted RBP11.92□□□□□ -0.5
HMGB1P23-201ENST00000518743 RNF216Q9NWF9 866 aaPredicted RBP11.9□□□□□ -0.5
HMGB1P23-201ENST00000518743 DCAF8L1A6NGE4 600 aa11.86□□□□□ -0.51
HMGB1P23-201ENST00000518743 DNAJC5BQ9UF47 199 aa11.82□□□□□ -0.52
HMGB1P23-201ENST00000518743 FOXD4L1Q9NU39 408 aa11.72□□□□□ -0.53
HMGB1P23-201ENST00000518743 ZBTB22O15209 634 aa11.69□□□□□ -0.54
HMGB1P23-201ENST00000518743 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.42□□□□□ -0.58
HMGB1P23-201ENST00000518743 RNF39Q9H2S5 420 aa11.41□□□□□ -0.58
HMGB1P23-201ENST00000518743 ATXN8OSP0DMR3 200 aa11.35□□□□□ -0.59
HMGB1P23-201ENST00000518743 CACNB1Q02641 598 aaPredicted RBP11.31□□□□□ -0.6
HMGB1P23-201ENST00000518743 MYCNP04198 464 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P23-201ENST00000518743 AMER1Q5JTC6 1135 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P23-201ENST00000518743 SLC4A2P04920 1241 aa11.27□□□□□ -0.61
HMGB1P23-201ENST00000518743 C1QBPQ07021 282 aaKnown RBP11.22□□□□□ -0.61
HMGB1P23-201ENST00000518743 U3KPZ7 1027 aaPredicted RBP11.2□□□□□ -0.62
HMGB1P23-201ENST00000518743 SLC24A1O60721 1099 aa11.11□□□□□ -0.63
HMGB1P23-201ENST00000518743 RTN4Q9NQC3 1192 aaKnown RBP11.06□□□□□ -0.64
HMGB1P23-201ENST00000518743 FKBP8Q14318 412 aa11.05□□□□□ -0.64
HMGB1P23-201ENST00000518743 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.04□□□□□ -0.64
HMGB1P23-201ENST00000518743 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
HMGB1P23-201ENST00000518743 SPINK5Q9NQ38 1064 aaPredicted RBP11□□□□□ -0.65
HMGB1P23-201ENST00000518743 ABCC9O60706 1549 aa10.99□□□□□ -0.65
HMGB1P23-201ENST00000518743 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
HMGB1P23-201ENST00000518743 CAPN15O75808 1086 aa10.94□□□□□ -0.66
HMGB1P23-201ENST00000518743 TRHP20396 242 aaPredicted RBP10.85□□□□□ -0.67
HMGB1P23-201ENST00000518743 APLP2Q06481 763 aa10.83□□□□□ -0.68
HMGB1P23-201ENST00000518743 DSG3P32926 999 aa10.79□□□□□ -0.68
HMGB1P23-201ENST00000518743 DNAJC5Q9H3Z4 198 aa10.79□□□□□ -0.68
HMGB1P23-201ENST00000518743 ABCB7O75027 752 aa10.75□□□□□ -0.69
HMGB1P23-201ENST00000518743 ZNF219Q9P2Y4 722 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P23-201ENST00000518743 ATF5Q9Y2D1 282 aaPredicted RBP10.74□□□□□ -0.69
HMGB1P23-201ENST00000518743 NISCHQ9Y2I1 1504 aa10.69□□□□□ -0.7
HMGB1P23-201ENST00000518743 FBXO3Q9UK99 471 aa10.69□□□□□ -0.7
HMGB1P23-201ENST00000518743 POLA2Q14181 598 aa10.61□□□□□ -0.71
HMGB1P23-201ENST00000518743 SPDYE4A6NLX3 237 aa10.51□□□□□ -0.73
HMGB1P23-201ENST00000518743 FBLN2P98095 1184 aa10.5□□□□□ -0.73
HMGB1P23-201ENST00000518743 PROM2Q8N271 834 aa10.41□□□□□ -0.74
HMGB1P23-201ENST00000518743 VASPP50552 380 aaPredicted RBP10.37□□□□□ -0.75
HMGB1P23-201ENST00000518743 ZBTB12Q9Y330 459 aaPredicted RBP10.35□□□□□ -0.75
HMGB1P23-201ENST00000518743 MKRN4PQ13434 485 aaPredicted RBP10.32□□□□□ -0.76
HMGB1P23-201ENST00000518743 PLCB2Q00722 1185 aa10.31□□□□□ -0.76
HMGB1P23-201ENST00000518743 OSCARQ8IYS5 282 aa10.27□□□□□ -0.77
HMGB1P23-201ENST00000518743 RBM42Q9BTD8 480 aaKnown RBP10.23□□□□□ -0.77
HMGB1P23-201ENST00000518743 DCAF8L2P0C7V8 631 aa10.2□□□□□ -0.78
HMGB1P23-201ENST00000518743 IFNLR1Q8IU57 520 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P23-201ENST00000518743 HAP1P54257 671 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P23-201ENST00000518743 STAG3Q9UJ98 1225 aa10.14□□□□□ -0.79
HMGB1P23-201ENST00000518743 TRIM41Q8WV44 630 aa10.11□□□□□ -0.79
HMGB1P23-201ENST00000518743 VSIG10Q8N0Z9 540 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 KLHL34Q8N239 644 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 SPOCK2Q92563 424 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 BCANQ96GW7 911 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 PKD2Q13563 968 aa10.09□□□□□ -0.79
HMGB1P23-201ENST00000518743 PABPN1Q86U42 306 aaKnown RBP eCLIP10.09□□□□□ -0.79
HMGB1P23-201ENST00000518743 AKT1S1Q96B36 256 aa10.07□□□□□ -0.8
HMGB1P23-201ENST00000518743 SPDYE2BA6NHP3 402 aa10.05□□□□□ -0.8
HMGB1P23-201ENST00000518743 SPDYE6P0CI01 402 aa10.05□□□□□ -0.8
HMGB1P23-201ENST00000518743 SPDYE2Q495Y8 402 aa10.05□□□□□ -0.8
HMGB1P23-201ENST00000518743 REM2Q8IYK8 340 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P23-201ENST00000518743 BBXQ8WY36 941 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P23-201ENST00000518743 ZNF692Q9BU19 519 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P23-201ENST00000518743 CCDC180Q9P1Z9 1646 aa10.02□□□□□ -0.81
HMGB1P23-201ENST00000518743 RB1CC1Q8TDY2 1594 aa10.01□□□□□ -0.81
HMGB1P23-201ENST00000518743 ECM2O94769 699 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P23-201ENST00000518743 PLEKHG5O94827 1062 aa10□□□□□ -0.81
HMGB1P23-201ENST00000518743 PLCD3Q8N3E9 789 aa10□□□□□ -0.81
HMGB1P23-201ENST00000518743 ZBTB47Q9UFB7 747 aaPredicted RBP10□□□□□ -0.81
HMGB1P23-201ENST00000518743 CECR2Q9BXF3 1484 aa9.97□□□□□ -0.81
HMGB1P23-201ENST00000518743 CHRDL2Q6WN34 429 aa9.96□□□□□ -0.82
HMGB1P23-201ENST00000518743 SSUH2Q9Y2M2 353 aa9.95□□□□□ -0.82
HMGB1P23-201ENST00000518743 PITPNM1O00562 1244 aa9.92□□□□□ -0.82
HMGB1P23-201ENST00000518743 MIER1Q8N108 512 aa9.92□□□□□ -0.82
HMGB1P23-201ENST00000518743 POTEHQ6S545 545 aa9.91□□□□□ -0.82
HMGB1P23-201ENST00000518743 PAXIP1Q6ZW49 1069 aaPredicted RBP9.87□□□□□ -0.83
HMGB1P23-201ENST00000518743 SPRYD3Q8NCJ5 442 aa9.86□□□□□ -0.83
HMGB1P23-201ENST00000518743 CLEC11AQ9Y240 323 aa9.85□□□□□ -0.83
HMGB1P23-201ENST00000518743 CFAP44Q96MT7 982 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms