Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SNED1Q8TER0 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SNED1Q8TER0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SNED1Q8TER0 HMGA1P5-201ENST00000412453 271 ntBASIC24.24■■□□□ 1.47
SNED1Q8TER0 ATP5G1P1-201ENST00000448724 379 ntBASIC24.24■■□□□ 1.47
SNED1Q8TER0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
SNED1Q8TER0 AP000692.2-201ENST00000608391 879 ntBASIC24.24■■□□□ 1.47
SNED1Q8TER0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
SNED1Q8TER0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
SNED1Q8TER0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
SNED1Q8TER0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.23■■□□□ 1.47
SNED1Q8TER0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SNED1Q8TER0 AC091076.1-201ENST00000610741 619 ntBASIC24.23■■□□□ 1.47
SNED1Q8TER0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SNED1Q8TER0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SNED1Q8TER0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
SNED1Q8TER0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.22■■□□□ 1.47
SNED1Q8TER0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC24.22■■□□□ 1.47
SNED1Q8TER0 AC128688.1-201ENST00000487626 519 ntBASIC24.22■■□□□ 1.47
SNED1Q8TER0 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 LINC00565-201ENST00000562710 2331 ntBASIC24.22■■□□□ 1.47
SNED1Q8TER0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
SNED1Q8TER0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SNED1Q8TER0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.22■■□□□ 1.47
SNED1Q8TER0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SNED1Q8TER0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SNED1Q8TER0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SNED1Q8TER0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SNED1Q8TER0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.21■■□□□ 1.47
SNED1Q8TER0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SNED1Q8TER0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SNED1Q8TER0 AC121338.2-201ENST00000622535 1744 ntBASIC24.2■■□□□ 1.47
SNED1Q8TER0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
SNED1Q8TER0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
SNED1Q8TER0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.2■■□□□ 1.46
SNED1Q8TER0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
SNED1Q8TER0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
SNED1Q8TER0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SNED1Q8TER0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SNED1Q8TER0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC24.2■■□□□ 1.46
SNED1Q8TER0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
SNED1Q8TER0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
SNED1Q8TER0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.19■■□□□ 1.46
SNED1Q8TER0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 YBX1P2-201ENST00000489612 999 ntBASIC24.19■■□□□ 1.46
SNED1Q8TER0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.19■■□□□ 1.46
SNED1Q8TER0 AL121894.2-201ENST00000602977 491 ntBASIC24.19■■□□□ 1.46
SNED1Q8TER0 HLA-A-209ENST00000638375 975 ntBASIC24.19■■□□□ 1.46
SNED1Q8TER0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.19■■□□□ 1.46
SNED1Q8TER0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SNED1Q8TER0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC24.19■■□□□ 1.46
SNED1Q8TER0 AC005229.4-201ENST00000610085 2198 ntBASIC24.19■■□□□ 1.46
SNED1Q8TER0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 AC009947.2-201ENST00000444014 672 ntBASIC24.18■■□□□ 1.46
SNED1Q8TER0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 AC139887.4-201ENST00000607877 719 ntBASIC24.18■■□□□ 1.46
SNED1Q8TER0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 AC130371.2-201ENST00000619443 611 ntBASIC24.18■■□□□ 1.46
SNED1Q8TER0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SNED1Q8TER0 COPE-203ENST00000351079 907 ntTSL 2 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.18■■□□□ 1.46
SNED1Q8TER0 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms