Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
LRIF1Q5T3J3 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
LRIF1Q5T3J3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.71■□□□□ 0.58
LRIF1Q5T3J3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRIF1Q5T3J3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 AL032819.2-201ENST00000624543 2162 ntBASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.69■□□□□ 0.58
LRIF1Q5T3J3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 PHGDH-210ENST00000641115 1638 ntBASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 HLA-G-202ENST00000376815 851 ntBASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 HLA-G-203ENST00000376818 1127 ntBASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 DUX4L16-201ENST00000555130 1264 ntBASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 CYP2T3P-201ENST00000601990 817 ntBASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LRIF1Q5T3J3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LRIF1Q5T3J3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms