Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 CCDC92B-201ENST00000575506 885 ntBASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 TNXA-203ENST00000507684 2038 ntBASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.06■□□□□ 0.32
CHMP1AQ9HD42 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 TCF3P1-201ENST00000423021 1937 ntBASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.05■□□□□ 0.32
CHMP1AQ9HD42 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 AC007322.3-201ENST00000426526 701 ntBASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 AC004408.2-201ENST00000623613 2777 ntBASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.04■□□□□ 0.32
CHMP1AQ9HD42 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHMP1AQ9HD42 KRT18P20-201ENST00000548986 1279 ntBASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms