Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
USP48Q86UV5 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC24.38■■□□□ 1.49
USP48Q86UV5 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC24.38■■□□□ 1.49
USP48Q86UV5 MIR6786-201ENST00000616843 113 ntBASIC24.38■■□□□ 1.49
USP48Q86UV5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC24.38■■□□□ 1.49
USP48Q86UV5 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC24.37■■□□□ 1.49
USP48Q86UV5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 AC087633.2-202ENST00000565166 1439 ntBASIC24.37■■□□□ 1.49
USP48Q86UV5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.37■■□□□ 1.49
USP48Q86UV5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 RER1-204ENST00000378518 522 ntTSL 3 BASIC24.37■■□□□ 1.49
USP48Q86UV5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC24.37■■□□□ 1.49
USP48Q86UV5 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC24.37■■□□□ 1.49
USP48Q86UV5 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC24.37■■□□□ 1.49
USP48Q86UV5 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC24.37■■□□□ 1.49
USP48Q86UV5 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USP48Q86UV5 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USP48Q86UV5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC24.36■■□□□ 1.49
USP48Q86UV5 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC24.36■■□□□ 1.49
USP48Q86UV5 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC24.36■■□□□ 1.49
USP48Q86UV5 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC24.36■■□□□ 1.49
USP48Q86UV5 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP48Q86UV5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC24.36■■□□□ 1.49
USP48Q86UV5 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 MOK-233ENST00000524214 1539 ntTSL 2 BASIC24.35■■□□□ 1.49
USP48Q86UV5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
USP48Q86UV5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC24.35■■□□□ 1.49
USP48Q86UV5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 AC005521.1-201ENST00000393351 872 ntBASIC24.35■■□□□ 1.49
USP48Q86UV5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC24.35■■□□□ 1.49
USP48Q86UV5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC24.35■■□□□ 1.49
USP48Q86UV5 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC24.35■■□□□ 1.49
USP48Q86UV5 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 AF186192.3-201ENST00000583427 947 ntBASIC24.35■■□□□ 1.49
USP48Q86UV5 AC005363.2-201ENST00000618631 242 ntBASIC24.35■■□□□ 1.49
USP48Q86UV5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP48Q86UV5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
USP48Q86UV5 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
USP48Q86UV5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.34■■□□□ 1.49
USP48Q86UV5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC24.34■■□□□ 1.49
USP48Q86UV5 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC24.34■■□□□ 1.49
USP48Q86UV5 RMI2-205ENST00000576027 818 ntTSL 2 BASIC24.34■■□□□ 1.49
USP48Q86UV5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC24.34■■□□□ 1.49
USP48Q86UV5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC24.34■■□□□ 1.49
USP48Q86UV5 RPS15-203ENST00000586096 570 ntTSL 2 BASIC24.34■■□□□ 1.49
USP48Q86UV5 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
USP48Q86UV5 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 HTR7P1-201ENST00000538670 1336 ntBASIC24.34■■□□□ 1.49
USP48Q86UV5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC24.34■■□□□ 1.49
USP48Q86UV5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP48Q86UV5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
USP48Q86UV5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.33■■□□□ 1.49
USP48Q86UV5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC24.33■■□□□ 1.49
USP48Q86UV5 FAM197Y1-201ENST00000421178 764 ntBASIC24.33■■□□□ 1.49
USP48Q86UV5 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC24.33■■□□□ 1.49
USP48Q86UV5 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC24.33■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms