Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC144BQ3MJ40 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 MDFI-202ENST00000373050 809 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 AC120498.8-201ENST00000614275 531 ntBASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC144BQ3MJ40 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
CCDC144BQ3MJ40 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.08■■□□□ 1.28
CCDC144BQ3MJ40 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.08■■□□□ 1.28
CCDC144BQ3MJ40 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.28
CCDC144BQ3MJ40 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC144BQ3MJ40 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.28
CCDC144BQ3MJ40 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 LY6E-205ENST00000519611 635 ntTSL 3 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 AL023875.1-201ENST00000640777 796 ntBASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC144BQ3MJ40 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 SERF2-207ENST00000409614 582 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 PGM5P4-201ENST00000421970 445 ntBASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 ECEL1P3-201ENST00000427961 737 ntBASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 TK2-204ENST00000525974 1178 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 AC005829.2-201ENST00000571422 1056 ntBASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 AC124016.1-201ENST00000609552 612 ntBASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 AC006557.6-201ENST00000623071 864 ntBASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC144BQ3MJ40 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC144BQ3MJ40 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms