Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.77■□□□□ 0.44
CLRN1P58418 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CLRN1P58418 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.77■□□□□ 0.44
CLRN1P58418 GPX1P1-201ENST00000388829 606 ntBASIC17.77■□□□□ 0.44
CLRN1P58418 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.77■□□□□ 0.44
CLRN1P58418 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.77■□□□□ 0.44
CLRN1P58418 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.77■□□□□ 0.44
CLRN1P58418 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLRN1P58418 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLRN1P58418 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CLRN1P58418 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLRN1P58418 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CLRN1P58418 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.76■□□□□ 0.43
CLRN1P58418 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.76■□□□□ 0.43
CLRN1P58418 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CLRN1P58418 MIPEPP3-201ENST00000412105 444 ntBASIC17.76■□□□□ 0.43
CLRN1P58418 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLRN1P58418 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.76■□□□□ 0.43
CLRN1P58418 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CLRN1P58418 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.76■□□□□ 0.43
CLRN1P58418 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.76■□□□□ 0.43
CLRN1P58418 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN1P58418 AL691432.2-201ENST00000607222 2038 ntBASIC17.76■□□□□ 0.43
CLRN1P58418 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.75■□□□□ 0.43
CLRN1P58418 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.75■□□□□ 0.43
CLRN1P58418 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.75■□□□□ 0.43
CLRN1P58418 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CLRN1P58418 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 NCF1B-203ENST00000435988 1254 ntBASIC17.75■□□□□ 0.43
CLRN1P58418 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.75■□□□□ 0.43
CLRN1P58418 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.75■□□□□ 0.43
CLRN1P58418 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.75■□□□□ 0.43
CLRN1P58418 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.75■□□□□ 0.43
CLRN1P58418 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.75■□□□□ 0.43
CLRN1P58418 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CLRN1P58418 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 HCG11-201ENST00000411553 5696 ntBASIC17.75■□□□□ 0.43
CLRN1P58418 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.75■□□□□ 0.43
CLRN1P58418 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CLRN1P58418 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN1P58418 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.75■□□□□ 0.43
CLRN1P58418 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.74■□□□□ 0.43
CLRN1P58418 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.74■□□□□ 0.43
CLRN1P58418 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.74■□□□□ 0.43
CLRN1P58418 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.74■□□□□ 0.43
CLRN1P58418 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.74■□□□□ 0.43
CLRN1P58418 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.74■□□□□ 0.43
CLRN1P58418 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.74■□□□□ 0.43
CLRN1P58418 AC023632.3-201ENST00000521633 145 ntBASIC17.74■□□□□ 0.43
CLRN1P58418 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.74■□□□□ 0.43
CLRN1P58418 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.74■□□□□ 0.43
CLRN1P58418 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.74■□□□□ 0.43
CLRN1P58418 AFG3L1P-217ENST00000557444 2447 ntBASIC17.74■□□□□ 0.43
CLRN1P58418 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.74■□□□□ 0.43
CLRN1P58418 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CLRN1P58418 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN1P58418 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLRN1P58418 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN1P58418 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CLRN1P58418 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN1P58418 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms