Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF40O75150 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.39■■□□□ 1.01
RNF40O75150 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.39■■□□□ 1.01
RNF40O75150 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.39■■□□□ 1.01
RNF40O75150 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.39■■□□□ 1.01
RNF40O75150 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RNF40O75150 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.39■■□□□ 1.01
RNF40O75150 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF40O75150 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.39■■□□□ 1.01
RNF40O75150 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF40O75150 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF40O75150 AC007225.1-201ENST00000566331 1836 ntBASIC21.39■■□□□ 1.01
RNF40O75150 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.38■■□□□ 1.01
RNF40O75150 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
RNF40O75150 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 AC243732.1-201ENST00000612648 864 ntBASIC21.38■■□□□ 1.01
RNF40O75150 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
RNF40O75150 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RNF40O75150 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RNF40O75150 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RNF40O75150 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.38■■□□□ 1.01
RNF40O75150 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.38■■□□□ 1.01
RNF40O75150 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 TNXA-203ENST00000507684 2038 ntBASIC21.38■■□□□ 1.01
RNF40O75150 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.38■■□□□ 1.01
RNF40O75150 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF40O75150 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.37■■□□□ 1.01
RNF40O75150 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF40O75150 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF40O75150 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF40O75150 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RNF40O75150 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF40O75150 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.37■■□□□ 1.01
RNF40O75150 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.37■■□□□ 1.01
RNF40O75150 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF40O75150 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF40O75150 AC004408.2-201ENST00000623613 2777 ntBASIC21.36■■□□□ 1.01
RNF40O75150 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.36■■□□□ 1.01
RNF40O75150 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF40O75150 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF40O75150 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
RNF40O75150 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
RNF40O75150 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.36■■□□□ 1.01
RNF40O75150 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.36■■□□□ 1.01
RNF40O75150 AC006058.3-201ENST00000606217 1069 ntBASIC21.36■■□□□ 1.01
RNF40O75150 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
RNF40O75150 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
RNF40O75150 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
RNF40O75150 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF40O75150 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF40O75150 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RNF40O75150 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
RNF40O75150 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.35■■□□□ 1.01
RNF40O75150 GCSHP5-201ENST00000443090 522 ntBASIC21.35■■□□□ 1.01
RNF40O75150 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.35■■□□□ 1.01
RNF40O75150 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RNF40O75150 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF40O75150 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF40O75150 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
RNF40O75150 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF40O75150 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RNF40O75150 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF40O75150 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms