Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 KRT18P20-201ENST00000548986 1279 ntBASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 CCDC92B-201ENST00000575506 885 ntBASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 RBM17P2-201ENST00000616397 1405 ntBASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 EDA-201ENST00000338901 1233 ntBASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 AP001271.2-201ENST00000624018 1556 ntBASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TRAV1-2A0A0B4J238 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 AL356652.1-201ENST00000615962 565 ntBASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-2A0A0B4J238 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 IRS3P-201ENST00000223076 1006 ntBASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 AC097381.1-201ENST00000429019 1296 ntBASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 AP001160.3-201ENST00000601484 763 ntBASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-2A0A0B4J238 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 CROCCP3-202ENST00000420820 1947 ntBASIC17.27■□□□□ 0.36
TRAV1-2A0A0B4J238 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms