Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 KIRREL1-203ENST00000368172 6870 ntTSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 GABRA4-201ENST00000264318 11973 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 ZNF322-201ENST00000415922 4817 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
CUX1P39880 RPL5P5-201ENST00000392009 893 ntBASIC11.19□□□□□ -0.62
CUX1P39880 ERMN-202ENST00000409216 746 ntTSL 4 BASIC11.19□□□□□ -0.62
CUX1P39880 RN7SKP296-201ENST00000411185 341 ntBASIC11.19□□□□□ -0.62
CUX1P39880 RPL5P34-201ENST00000426545 891 ntBASIC11.19□□□□□ -0.62
CUX1P39880 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC11.19□□□□□ -0.62
CUX1P39880 RPL5P9-201ENST00000448118 886 ntBASIC11.19□□□□□ -0.62
CUX1P39880 RN7SL870P-201ENST00000460111 296 ntBASIC11.19□□□□□ -0.62
CUX1P39880 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC11.19□□□□□ -0.62
CUX1P39880 LSM3P4-201ENST00000502948 309 ntBASIC11.19□□□□□ -0.62
CUX1P39880 AC112225.1-201ENST00000508230 297 ntBASIC11.19□□□□□ -0.62
CUX1P39880 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 OSTC-205ENST00000613215 876 ntTSL 2 BASIC11.19□□□□□ -0.62
CUX1P39880 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC11.19□□□□□ -0.62
CUX1P39880 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC11.19□□□□□ -0.62
CUX1P39880 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 AC021683.2-203ENST00000591283 4902 ntTSL 5 BASIC11.19□□□□□ -0.62
CUX1P39880 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 AC025569.1-202ENST00000548687 5903 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CUX1P39880 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC11.18□□□□□ -0.62
CUX1P39880 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC11.18□□□□□ -0.62
CUX1P39880 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CUX1P39880 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CUX1P39880 CPEB1-209ENST00000614918 4882 ntTSL 5 BASIC11.18□□□□□ -0.62
CUX1P39880 TMC3-AS1-206ENST00000612811 2726 ntBASIC11.18□□□□□ -0.62
CUX1P39880 SBF2-201ENST00000256190 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CUX1P39880 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
CUX1P39880 AL512422.1-201ENST00000407033 553 ntBASIC11.18□□□□□ -0.62
CUX1P39880 IPPKP1-201ENST00000422501 768 ntBASIC11.18□□□□□ -0.62
CUX1P39880 HLA-DPA3-207ENST00000454398 229 ntBASIC11.18□□□□□ -0.62
CUX1P39880 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC11.18□□□□□ -0.62
CUX1P39880 AP000577.1-201ENST00000624366 878 ntBASIC11.18□□□□□ -0.62
CUX1P39880 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC11.18□□□□□ -0.62
CUX1P39880 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CUX1P39880 AC125603.4-201ENST00000621942 2699 ntBASIC11.18□□□□□ -0.62
CUX1P39880 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CUX1P39880 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
CUX1P39880 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC11.17□□□□□ -0.62
CUX1P39880 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC11.17□□□□□ -0.62
CUX1P39880 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
CUX1P39880 GUCY1A3-202ENST00000393832 4286 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 HPS4-201ENST00000336873 3786 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
CUX1P39880 XRCC6P5-201ENST00000435236 1795 ntBASIC11.17□□□□□ -0.62
CUX1P39880 AL157702.1-201ENST00000398764 426 ntBASIC11.17□□□□□ -0.62
CUX1P39880 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC11.17□□□□□ -0.62
CUX1P39880 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC11.17□□□□□ -0.62
CUX1P39880 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC11.17□□□□□ -0.62
CUX1P39880 HMGB1P7-201ENST00000450921 612 ntBASIC11.17□□□□□ -0.62
CUX1P39880 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC11.17□□□□□ -0.62
CUX1P39880 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC11.17□□□□□ -0.62
CUX1P39880 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC11.17□□□□□ -0.62
CUX1P39880 AC036111.2-201ENST00000533247 901 ntBASIC11.17□□□□□ -0.62
CUX1P39880 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC11.17□□□□□ -0.62
CUX1P39880 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC11.17□□□□□ -0.62
CUX1P39880 AP005136.2-201ENST00000583253 1049 ntBASIC11.17□□□□□ -0.62
CUX1P39880 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC11.17□□□□□ -0.62
CUX1P39880 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC11.17□□□□□ -0.62
CUX1P39880 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 AC010478.1-201ENST00000601500 6762 ntBASIC11.17□□□□□ -0.62
CUX1P39880 AC104837.1-201ENST00000444644 1587 ntBASIC11.17□□□□□ -0.62
CUX1P39880 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC11.17□□□□□ -0.62
CUX1P39880 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CUX1P39880 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC11.17□□□□□ -0.62
CUX1P39880 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC11.16□□□□□ -0.62
CUX1P39880 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 AL354854.1-201ENST00000455940 1363 ntBASIC11.16□□□□□ -0.62
CUX1P39880 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CUX1P39880 RNA5SP110-201ENST00000362638 115 ntBASIC11.16□□□□□ -0.62
CUX1P39880 HMGN1P20-201ENST00000411849 300 ntBASIC11.16□□□□□ -0.62
CUX1P39880 AC104843.2-201ENST00000427666 297 ntBASIC11.16□□□□□ -0.62
CUX1P39880 AC073109.1-201ENST00000445066 978 ntBASIC11.16□□□□□ -0.62
CUX1P39880 AC097463.1-201ENST00000447288 481 ntBASIC11.16□□□□□ -0.62
CUX1P39880 RNA5SP206-201ENST00000516703 121 ntBASIC11.16□□□□□ -0.62
CUX1P39880 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC11.16□□□□□ -0.62
CUX1P39880 AL513548.2-201ENST00000602994 1207 ntBASIC11.16□□□□□ -0.62
CUX1P39880 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC11.16□□□□□ -0.62
CUX1P39880 AL121583.1-201ENST00000612444 682 ntBASIC11.16□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms